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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:curatedPCaData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings curatedPCaData_1.0.4.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/curatedPCaData.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘curatedPCaData/DESCRIPTION’ ... OK
* this is package ‘curatedPCaData’ version ‘1.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘curatedPCaData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
getPCaSummaryStudies            199.666 11.105 236.750
getPCaSummarySamples             27.541  1.622  31.778
getPCaSummaryTable               25.867  1.525  30.308
getPCaSummarySurv                25.665  1.597  29.598
curatedPCaDatasets_abida         17.375  2.196  21.011
getPCa                           14.203  0.886  16.776
curatedPCaDatasets_tcga          13.502  0.816  20.931
curatedPCaDatasets_barbieri      12.478  0.745  14.580
curatedPCaDatasets_taylor        12.339  0.664  14.442
curatedPCaDatasets_weiner        11.986  0.924  14.091
curatedPCaDatasets_ren           11.556  0.604  13.235
curatedPCaDatasets_wang          11.042  0.683  12.909
curatedPCaDatasets_wallace       10.802  0.808  13.063
curatedPCaDatasets_chandran      10.768  0.692  12.433
curatedPCaDatasets_friedrich     10.359  1.013  12.617
curatedPCaDatasets_kim           10.352  0.736  12.545
curatedPCaDatasets_sun           10.402  0.617  12.758
curatedPCaDatasets_icgcca         9.973  0.780  12.121
curatedPCaDatasets_true           9.780  0.944  12.195
curatedPCaDatasets_kunderfranco   9.988  0.535  11.739
curatedPCaDatasets_igc            9.597  0.619  11.618
curatedPCaDatasets_barwick        8.605  0.474   9.889
curatedPCaDatasets_baca           4.419  0.341   5.516
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘native_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK