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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL TCGAWorkflow
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’
* installing *source* package ‘TCGAWorkflow’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow'
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'TCGAWorkflow'
Warning: replacing previous import 'ggpubr::mutate' by 'plyr::mutate' when loading 'TCGAWorkflow'
Warning: replacing previous import 'ChIPseeker::.' by 'plyr::.' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'TCGAWorkflow'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow'
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'TCGAWorkflow'
Warning: replacing previous import 'ggpubr::mutate' by 'plyr::mutate' when loading 'TCGAWorkflow'
Warning: replacing previous import 'ChIPseeker::.' by 'plyr::.' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'TCGAWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow'
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'TCGAWorkflow'
Warning: replacing previous import 'ggpubr::mutate' by 'plyr::mutate' when loading 'TCGAWorkflow'
Warning: replacing previous import 'ChIPseeker::.' by 'plyr::.' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'TCGAWorkflow'
Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'TCGAWorkflow'
** testing if installed package keeps a record of temporary installation path
* DONE (TCGAWorkflow)