############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mslp.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mslp_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/mslp.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mslp/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mslp’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mslp’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed est_im 10.372 0.127 17.401 comp_slp 6.085 0.387 11.067 merge_slp 4.932 0.063 7.629 corr_slp 4.472 0.058 8.287 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘tinytest.R’ ERROR Running the tests in ‘tests/tinytest.R’ failed. Last 13 lines of output: test_corr_slp.R............... 0 tests test_corr_slp.R............... 0 tests test_corr_slp.R............... 0 tests (II) Number of mutations: 5. test_corr_slp.R............... 0 tests test_corr_slp.R............... 1 tests 1 fails 6.7s ----- FAILED[data]: test_corr_slp.R<5--5> call| expect_equal(head(res$slp_entrez), c("751071", "10395", "57864", call| --> "54629", "54898", "1778")) diff| 6 string mismatches Error: 1 out of 2 tests failed In addition: Warning message: executing %dopar% sequentially: no parallel backend registered Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR See ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/mslp.Rcheck/00check.log’ for details.