############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data densvis ### ############################################################################## ############################################################################## * checking for file ‘densvis/DESCRIPTION’ ... OK * preparing ‘densvis’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘densvis.Rmd’ using rmarkdown Quitting from lines 123-130 [run-densmap] (densvis.Rmd) Error: processing vignette 'densvis.Rmd' failed with diagnostics: ImportError: dlopen(/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/python3.8/site-packages/scipy/special/_ufuncs.cpython-38-darwin.so, 0x0002): Library not loaded: '@rpath/libgcc_s.2.dylib' Referenced from: '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/python3.8/site-packages/scipy/special/_ufuncs.cpython-38-darwin.so' <...truncated...>.2.dylib' (no such file), '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/python3.8/site-packages/scipy/special/../../../../libgcc_s.2.dylib' (no such file), '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/libgcc_s.2.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgcc_s.2.dylib' (no such file), '/usr/local/jdk-18.0.1.1.jdk/Contents/Home/lib/server/libgcc_s.2.dylib' (no such file) Run `reticulate::py_last_error()` for details. --- failed re-building ‘densvis.Rmd’ SUMMARY: processing the following file failed: ‘densvis.Rmd’ Error: Vignette re-building failed. Execution halted