############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL IgGeneUsage ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘IgGeneUsage’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include' -I/opt/R/arm64/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Core:540: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:2: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/LU:47: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Cholesky:12: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Jacobi:29: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Cholesky:43: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/QR:15: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Householder:27: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/QR:48: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:5: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SVD:48: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:6: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Geometry:58: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Eigenvalues:58: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:66: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:27: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/OrderingMethods:71: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SparseCholesky:43: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:32: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SparseQR:34: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:33: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:32: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/CholmodSupport:45: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:39: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:40: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ 18 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include' -I/opt/R/arm64/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0 -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_zibb.cc -o stanExports_zibb.o In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Core:540: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:2: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/LU:47: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Cholesky:12: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Jacobi:29: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Cholesky:43: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/QR:15: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Householder:27: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/QR:48: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:5: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SVD:48: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:6: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Geometry:58: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Dense:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Eigenvalues:58: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:66: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:27: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/OrderingMethods:71: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SparseCholesky:43: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:32: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/SparseQR:34: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:33: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:32: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/CholmodSupport:45: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:39: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:40: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:28: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:6: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] bool error = false; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:54: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/profiling.hpp:9: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/err.hpp:50: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] int n_transitions = log_omegas.cols() - 1; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun.hpp:118: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] double neg_root_5 = -root_5; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun.hpp:183: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] const int N = stan::math::size(theta); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:87: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] size_t N = max_size(y, mu, sigma); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:128: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] int n = G.rows(); // number of states ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:139: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] const int n_states = omegas.rows(); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:315: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] static const char* function = "std_normal_rng"; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:335: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] double ck = 50; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/indexing.hpp:9: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/indexing.hpp:10: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] const Eigen::Index x_cols = x.cols(); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] [avi = a.vi_, b](const auto& vi) mutable { ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here vi_ = (*this - b).vi_; ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here re_ -= x; ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here y -= rhs; ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here return internal::complex_subtract(x, y); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here auto y = log(z + sqrt(z * z - 1)); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here return stan::math::internal::complex_acosh(z); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:28: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] [avi = a.vi_, b](const auto& vi) mutable { ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:28: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] [avi = a.vi_, b](const auto& vi) mutable { ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here inline var trigamma(const var& u) { return trigamma_impl(u); } ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] [bvi = b.vi_, a](const auto& vi) mutable { ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here return ub - exp(x); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int>' requested here return ub_constrain(x, ub, lp); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/io/reader.hpp:748:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here return stan::math::lub_constrain(scalar(), lb, ub, lp); ^ ./stanExports_zibb.h:496:26: note: in instantiation of function template specialization 'stan::io::reader>::scalar_lub_constrain' requested here z = in__.scalar_lub_constrain(0, 1, lp__); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_zibb_namespace::model_zibb::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_zibb.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] [bvi = b.vi_, a](const auto& vi) mutable { ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/io/reader.hpp:748:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here return stan::math::lub_constrain(scalar(), lb, ub, lp); ^ ./stanExports_zibb.h:496:26: note: in instantiation of function template specialization 'stan::io::reader>::scalar_lub_constrain' requested here z = in__.scalar_lub_constrain(0, 1, lp__); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_zibb_namespace::model_zibb::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_zibb.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:52: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] container_operands_(index_apply([&, this](auto... Is) { ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here return new precomputed_gradients_vari_template< ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/bernoulli_lpmf.hpp:110:23: note: in instantiation of member function 'stan::math::operands_and_partials &, double, double, double, double, stan::math::var_value>::build' requested here return ops_partials.build(logp); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/bernoulli_lpmf.hpp:115:10: note: in instantiation of function template specialization 'stan::math::bernoulli_lpmf, nullptr>' requested here return bernoulli_lpmf(n, theta); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/bernoulli_log.hpp:23:10: note: in instantiation of function template specialization 'stan::math::bernoulli_lpmf>' requested here return bernoulli_lpmf(n, theta); ^ ./stanExports_zibb.h:57:82: note: in instantiation of function template specialization 'stan::math::bernoulli_log>' requested here return stan::math::promote_scalar(log_sum_exp(bernoulli_log(1, zi), (bernoulli_log(0, zi) + beta_binomial_log(0, trials, a, b)))); ^ ./stanExports_zibb.h:75:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return zibb_lpmf(y,trials,a,b,zi, pstream__); ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_zibb.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:52: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] container_gradients_(index_apply([&, this](auto... Is) { ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core.hpp:59: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] static void set_zero_all_adjoints() { ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun.hpp:110: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] using value_t = value_type_t; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun.hpp:319: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] using idx_t = index_type_t>; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:32: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] using Block_ = Eigen::Block; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:34: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] using T_scalar = value_type_t; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun.hpp:71: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] using value_t = value_type_t; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] using T_y_val = ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] using T_partials_matrix = Eigen::Matrix; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] using T_partials_vec = typename Eigen::Matrix; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:111: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array; ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:20: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/rstaninc.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/rstan/include/rstan/stan_fit.hpp:35: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] using T_alpha_val = typename std::conditional_t< ^ In file included from stanExports_zibb.cc:5: In file included from ./stanExports_zibb.h:22: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/indexing.hpp:8: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] using pair_type = std::pair; ^ In file included from stanExports_zibb.cc:5: ./stanExports_zibb.h:266:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] typedef double local_scalar_t__; ^ 54 warnings generated. clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o IgGeneUsage.so RcppExports.o stanExports_zibb.o -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/lib/ -Wl,-rpath,/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-IgGeneUsage/00new/IgGeneUsage/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IgGeneUsage)