############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tilingArray_1.76.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R tilingArray.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=tilingArray.buildbin-libdir tilingArray_1.76.0.tar.gz' >>>>>>> * installing *source* package ‘tilingArray’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c findsegments.c -o findsegments.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sampleStep.c -o sampleStep.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o tilingArray.so findsegments.o sampleStep.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Volumes/External/bbs-3.16-bioc-m1/meat/tilingArray.buildbin-libdir/00LOCK-tilingArray/00new/tilingArray/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tilingArray) >>>>>>> >>>>>>> FIXING LINKS FOR tilingArray.buildbin-libdir/tilingArray/libs/tilingArray.so >>>>>>> install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "tilingArray.buildbin-libdir/tilingArray/libs/tilingArray.so" install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "tilingArray.buildbin-libdir/tilingArray/libs/tilingArray.so" install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "tilingArray.buildbin-libdir/tilingArray/libs/tilingArray.so"