############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL genoCN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘genoCN’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tnorm_mle.c -o tnorm_mle.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utility.c -o utility.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c xCNV.c -o xCNV.o xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable] int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR; ^ xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable] int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR; ^ xCNV.c:787:10: warning: unused variable 'mu_b_tmp' [-Wunused-variable] double mu_b_tmp, sd_b_tmp; ^ xCNV.c:787:20: warning: unused variable 'sd_b_tmp' [-Wunused-variable] double mu_b_tmp, sd_b_tmp; ^ xCNV.c:762:10: warning: variable 'LL' set but not used [-Wunused-but-set-variable] int L, LL, N, NN, M, MM, S, LS, CNA = *RCNA, ^ 5 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-genoCN/00new/genoCN/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genoCN)