############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf AMOUNTAIN.buildbin-libdir && mkdir AMOUNTAIN.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AMOUNTAIN_1.24.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R AMOUNTAIN.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AMOUNTAIN.buildbin-libdir AMOUNTAIN_1.24.0.tar.gz' >>>>>>> * installing *source* package ‘AMOUNTAIN’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC -falign-functions=64 -Wall -g -O2 -c AMOUNTAIN.c -o AMOUNTAIN.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o AMOUNTAIN.so AMOUNTAIN.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Volumes/External/bbs-3.16-bioc-m1/meat/AMOUNTAIN.buildbin-libdir/00LOCK-AMOUNTAIN/00new/AMOUNTAIN/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AMOUNTAIN) >>>>>>> >>>>>>> FIXING LINKS FOR AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs/AMOUNTAIN.so >>>>>>> install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs/AMOUNTAIN.so" install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs/AMOUNTAIN.so" install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs/AMOUNTAIN.so"