Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:07:58 -0400 (Wed, 15 Apr 2020).
Package 1756/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
trio 3.24.3 Holger Schwender
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: trio |
Version: 3.24.3 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:trio.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings trio_3.24.3.tar.gz |
StartedAt: 2020-04-15 01:49:39 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 01:52:27 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 168.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: trio.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:trio.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings trio_3.24.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/trio.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘trio/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘trio’ version ‘3.24.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘trio’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Foreign function call to a different package: .C("clogreg", ..., PACKAGE = "LogicReg") See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed print.trioFS 8.880 0.080 9.015 trioFS 8.568 0.036 8.621 trio.permTest 7.464 0.100 7.576 colGxGPerms 6.856 0.020 6.897 plot.trioLR 5.604 0.044 5.701 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.10-bioc/meat/trio.Rcheck/00check.log’ for details.
trio.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL trio ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘trio’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘trio.Rnw’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trio)
trio.Rcheck/trio-Ex.timings
name | user | system | elapsed | |
allelicTDT | 0.024 | 0.000 | 0.025 | |
colEMlrt | 0.148 | 0.000 | 0.151 | |
colGxE | 0.012 | 0.000 | 0.013 | |
colGxGPerms | 6.856 | 0.020 | 6.897 | |
colPOlrt | 0.024 | 0.000 | 0.023 | |
colTDTmaxTest | 0.068 | 0.000 | 0.070 | |
colTDTsam | 0.048 | 0.000 | 0.049 | |
findLDblocks | 0.032 | 0.000 | 0.031 | |
getLD | 0.024 | 0.000 | 0.023 | |
getMatPseudo | 0.02 | 0.00 | 0.02 | |
lrControl | 0.000 | 0.000 | 0.001 | |
ped2geno | 0.000 | 0.000 | 0.001 | |
plot.LDblocks | 0.072 | 0.000 | 0.074 | |
plot.getLD | 0.036 | 0.000 | 0.033 | |
plot.trioLR | 5.604 | 0.044 | 5.701 | |
poly4root | 0.000 | 0.000 | 0.001 | |
print.colGxE | 0.048 | 0.000 | 0.047 | |
print.trioFS | 8.880 | 0.080 | 9.015 | |
print.trioLR | 2.512 | 0.000 | 2.519 | |
probTDT | 0.040 | 0.000 | 0.039 | |
read.pedfile | 0.000 | 0.000 | 0.001 | |
removeSNPs | 0.008 | 0.000 | 0.006 | |
scoreTDT | 0.012 | 0.000 | 0.010 | |
tdt | 0.032 | 0.000 | 0.032 | |
tdtGxG | 1.872 | 0.000 | 1.874 | |
trio.check | 1.040 | 0.004 | 1.044 | |
trio.data | 0.008 | 0.000 | 0.008 | |
trio.permTest | 7.464 | 0.100 | 7.576 | |
trio.power | 0.020 | 0.000 | 0.019 | |
trio.prepare | 2.928 | 0.004 | 2.940 | |
trio.sim | 0.432 | 0.000 | 0.437 | |
trioFS | 8.568 | 0.036 | 8.621 | |
trioLR | 2.884 | 0.000 | 2.884 | |