Laurent Gatto
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/pRoloc |
| Branch: RELEASE_3_10 |
| Last Commit: c5fe2c7 |
| Last Changed Date: 2019-10-29 13:08:35 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:21:11 -0400 (Wed, 15 Apr 2020).
| Package 1313/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pRoloc 1.26.0 Laurent Gatto
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: pRoloc |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/pRoloc_1.26.0.tar.gz && rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pRoloc.buildbin-libdir pRoloc_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.26.0.zip && rm pRoloc_1.26.0.tar.gz pRoloc_1.26.0.zip |
| StartedAt: 2020-04-14 20:38:30 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:40:40 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 130.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/pRoloc_1.26.0.tar.gz && rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pRoloc.buildbin-libdir pRoloc_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.26.0.zip && rm pRoloc_1.26.0.tar.gz pRoloc_1.26.0.zip
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install for i386
* installing *source* package 'pRoloc' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c dmvtCpp.cpp -o dmvtCpp.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c pRoloc.cpp -o pRoloc.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pRoloc.dll tmp.def RcppExports.o dmvtCpp.o pRoloc.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/pRoloc.buildbin-libdir/00LOCK-pRoloc/00new/pRoloc/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocGenerics::type' by 'kernlab::type' when loading 'pRoloc'
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'pRoloc'
** help
*** installing help indices
converting help for package 'pRoloc'
finding HTML links ... done
AnnotationParams-class html
ClustDist-class html
ClustDistList-class html
GenRegRes-class html
finding level-2 HTML links ... done
MCMCParams html
MLearn-methods html
MartInstance-class html
QSep-class html
SpatProtVis-class html
addGoAnnotations html
addLegend html
addMarkers html
checkFeatureNamesOverlap html
checkFvarOverlap html
chi2-methods html
classWeights html
clustDist html
defunct html
empPvalues html
exprsToRatios-methods html
fDataToUnknown html
filterBinMSnSet html
filterMaxMarkers html
filterMinMarkers html
filterZeroCols html
getGOFromFeatures html
getMarkerClasses html
getMarkers html
getNormDist html
getPredictions html
getStockcol html
goIdToTerm html
highlightOnPlot html
knnClassification html
knnOptimisation html
knntlClassification html
knntlOptimisation html
ksvmClassification html
ksvmOptimisation html
lopims html
makeGoSet html
markerMSnSet html
markers html
mcmc-helpers html
minMarkers html
move2Ds html
mrkConsProfiles html
mrkHClust html
nbClassification html
nbOptimisation html
nndist-methods html
nnetClassification html
nnetOptimisation html
orderGoAnnotations html
orgQuants html
pRolocmarkers html
perTurboClassification html
perTurboOptimisation html
phenoDisco html
plot2D html
plot2Ds html
plotConsProfiles html
plotDist html
plotEllipse html
plsdaClassification html
plsdaOptimisation html
rfClassification html
rfOptimisation html
sampleMSnSet html
showGOEvidenceCodes html
subsetMarkers html
svmClassification html
svmOptimisation html
tagm-map html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu4t8oq/R.INSTALL2bf03a75e97/pRoloc/man/tagm-map.Rd:27: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu4t8oq/R.INSTALL2bf03a75e97/pRoloc/man/tagm-map.Rd:90: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu4t8oq/R.INSTALL2bf03a75e97/pRoloc/man/tagm-map.Rd:79: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
tagm-mcmc html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu4t8oq/R.INSTALL2bf03a75e97/pRoloc/man/tagm-mcmc.Rd:24: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu4t8oq/R.INSTALL2bf03a75e97/pRoloc/man/tagm-mcmc.Rd:115: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu4t8oq/R.INSTALL2bf03a75e97/pRoloc/man/tagm-mcmc.Rd:90: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
testMSnSet html
testMarkers html
thetas html
undocumented html
zerosInBinMSnSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'BiocGenerics::type' by 'kernlab::type' when loading 'pRoloc'
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'pRoloc'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'BiocGenerics::type' by 'kernlab::type' when loading 'pRoloc'
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'pRoloc'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pRoloc' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c dmvtCpp.cpp -o dmvtCpp.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c pRoloc.cpp -o pRoloc.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pRoloc.dll tmp.def RcppExports.o dmvtCpp.o pRoloc.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::type' by 'kernlab::type' when loading 'pRoloc'
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'pRoloc'
* MD5 sums
packaged installation of 'pRoloc' as pRoloc_1.26.0.zip
* DONE (pRoloc)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'pRoloc' successfully unpacked and MD5 sums checked