Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:12:30 -0400 (Wed, 15 Apr 2020).
Package 1086/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
motifcounter 1.10.0 Wolfgang Kopp
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: motifcounter |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL motifcounter |
StartedAt: 2020-04-14 18:15:01 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 18:15:13 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 12.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL motifcounter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘motifcounter’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rbackground.c -o Rbackground.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rcombinatorial.c -o Rcombinatorial.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rcompoundpoisson.c -o Rcompoundpoisson.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rminmaxscore.c -o Rminmaxscore.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Roption.c -o Roption.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Roverlap.c -o Roverlap.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rscore1d.c -o Rscore1d.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rsequence.c -o Rsequence.o Rsequence.c: In function ‘RscoreHistogram’: Rsequence.c:143:21: warning: unused variable ‘noscores’ [-Wunused-variable] int mins, maxs, noscores; ^~~~~~~~ gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c Rsimulate.c -o Rsimulate.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c background.c -o background.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c combinatorial.c -o combinatorial.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c compoundpoisson.c -o compoundpoisson.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c markovchain.c -o markovchain.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c markovchain_single.c -o markovchain_single.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c matrix.c -o matrix.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c mdist_register.c -o mdist_register.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c minmaxscore.c -o minmaxscore.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c overlap.c -o overlap.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c score1d.c -o score1d.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c score2d.c -o score2d.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c scorefunctions.c -o scorefunctions.o scorefunctions.c: In function ‘getPositionWeights’: scorefunctions.c:84:22: warning: unused variable ‘cindex’ [-Wunused-variable] int j, i, index, cindex, ds; ^~~~~~ scorefunctions.c: In function ‘hitSequence’: scorefunctions.c:119:17: warning: unused variable ‘cindex’ [-Wunused-variable] int s, index, cindex; ^~~~~~ scorefunctions.c: In function ‘scoreSequence’: scorefunctions.c:159:19: warning: unused variable ‘cindex’ [-Wunused-variable] int s, index, cindex; ^~~~~~ gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c sequence.c -o sequence.o gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fpic -g -O2 -Wall -c simulate.c -o simulate.o gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o motifcounter.so Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -fopenmp -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-motifcounter/00new/motifcounter/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (motifcounter)