Davide Risso
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/mbkmeans |
| Branch: RELEASE_3_10 |
| Last Commit: 6ea1350 |
| Last Changed Date: 2019-10-29 13:11:37 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:32:12 -0400 (Wed, 15 Apr 2020).
| Package 969/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| mbkmeans 1.2.0 Davide Risso
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: mbkmeans |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/mbkmeans_1.2.0.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.2.0.zip && rm mbkmeans_1.2.0.tar.gz mbkmeans_1.2.0.zip |
| StartedAt: 2020-04-14 19:41:12 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:43:02 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 109.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/mbkmeans_1.2.0.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.2.0.zip && rm mbkmeans_1.2.0.tar.gz mbkmeans_1.2.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 17945 100 17945 0 0 240k 0 --:--:-- --:--:-- --:--:-- 253k
install for i386
* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:0:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h:837:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h:1433:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mbkmeans'
finding HTML links ... done
blocksize html
compute_wcss html
mbkmeans html
mini_batch html
predict_mini_batch html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'mbkmeans' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:0:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h:837:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/ClusterR/include/ClusterRHeader.h:1433:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/mbkmeans.buildbin-libdir/mbkmeans/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.2.0.zip
* DONE (mbkmeans)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'mbkmeans' successfully unpacked and MD5 sums checked