Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:17:40 -0400 (Wed, 15 Apr 2020).
Package 624/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gaggle 1.54.0 Christopher Bare
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: gaggle |
Version: 1.54.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/gaggle_1.54.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL gaggle_1.54.0.zip && rm gaggle_1.54.0.tar.gz gaggle_1.54.0.zip |
StartedAt: 2020-04-14 18:43:00 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 18:45:38 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 157.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/gaggle_1.54.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL gaggle_1.54.0.zip && rm gaggle_1.54.0.tar.gz gaggle_1.54.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 184k 100 184k 0 0 5443k 0 --:--:-- --:--:-- --:--:-- 6165k install for i386 * installing *source* package 'gaggle' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gaggle' finding HTML links ... done broadcast html connectToGaggle html disconnectFromGaggle html gaggleInit html geese html getCluster html getJavaClassName html getMatrix html getNameList html getNetwork html getSpecies html getTargetGoose html getTuple html hideGoose html newTuple html setSpecies html setTargetGoose html showGoose html testGagglePackage html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location onLoad -- libname: C:/Users/biocbuild/bbs-3.10-bioc/meat/gaggle.buildbin-libdir/00LOCK-gaggle/00new pkgname: gaggle path to jar: C:/Users/biocbuild/bbs-3.10-bioc/meat/gaggle.buildbin-libdir/00LOCK-gaggle/00new/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Windows Server 2012 R2 jvm version: 1.8.0_102 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java ** testing if installed package can be loaded from final location onLoad -- libname: C:/Users/biocbuild/bbs-3.10-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle path to jar: C:/Users/biocbuild/bbs-3.10-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Windows Server 2012 R2 jvm version: 1.8.0_102 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gaggle' ... ** testing if installed package can be loaded onLoad -- libname: C:/Users/biocbuild/bbs-3.10-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle path to jar: C:/Users/biocbuild/bbs-3.10-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Windows Server 2012 R2 jvm version: 1.8.0_102 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java * MD5 sums packaged installation of 'gaggle' as gaggle_1.54.0.zip * DONE (gaggle) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'gaggle' successfully unpacked and MD5 sums checked