Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:14:32 -0400 (Wed, 15 Apr 2020).
Package 363/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
coRdon 1.4.0 Anamaria Elek
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: coRdon |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:coRdon.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings coRdon_1.4.0.tar.gz |
StartedAt: 2020-04-15 05:55:38 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 05:58:28 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 170.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: coRdon.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:coRdon.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings coRdon_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/coRdon.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘coRdon/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘coRdon’ version ‘1.4.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘coRdon’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed reduceCrossTab 192.348 1.104 39.026 codonUsage-expressivity 20.208 0.116 6.450 codonUsage 9.860 0.052 3.472 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
coRdon.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL coRdon ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘coRdon’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (coRdon)
coRdon.Rcheck/tests/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(coRdon) > > test_check("coRdon") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 26 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 22.452 0.288 11.998
coRdon.Rcheck/coRdon-Ex.timings
name | user | system | elapsed | |
bplot | 1.800 | 0.008 | 1.029 | |
codonTable-class | 0.700 | 0.008 | 0.320 | |
codonUsage-expressivity | 20.208 | 0.116 | 6.450 | |
codonUsage | 9.860 | 0.052 | 3.472 | |
crossTab-class | 0.024 | 0.004 | 0.028 | |
enrichBarplot | 1.292 | 0.000 | 0.850 | |
enrichMAplot | 1.544 | 0.000 | 1.545 | |
enrichMatrix | 1.940 | 0.020 | 1.035 | |
enrichment | 1.808 | 0.008 | 1.118 | |
intraBplot | 2.340 | 0.024 | 1.364 | |
readSet | 0.128 | 0.000 | 0.130 | |
reduceCrossTab | 192.348 | 1.104 | 39.026 | |
subset | 0.560 | 0.008 | 0.195 | |