Jun Woo
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ccfindR |
| Branch: RELEASE_3_10 |
| Last Commit: 8b5b604 |
| Last Changed Date: 2019-10-29 13:11:09 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:30:25 -0400 (Wed, 15 Apr 2020).
| Package 233/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ccfindR 1.6.0 Jun Woo
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ccfindR |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ccfindR_1.6.0.tar.gz && rm -rf ccfindR.buildbin-libdir && mkdir ccfindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccfindR.buildbin-libdir ccfindR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ccfindR_1.6.0.zip && rm ccfindR_1.6.0.tar.gz ccfindR_1.6.0.zip |
| StartedAt: 2020-04-14 19:41:33 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:43:33 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 119.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ccfindR_1.6.0.tar.gz && rm -rf ccfindR.buildbin-libdir && mkdir ccfindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccfindR.buildbin-libdir ccfindR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ccfindR_1.6.0.zip && rm ccfindR_1.6.0.tar.gz ccfindR_1.6.0.zip
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install for i386
* installing *source* package 'ccfindR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c vbnmf_update.cpp -o vbnmf_update.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ccfindR.dll tmp.def RcppExports.o vbnmf_update.o -lgsl -lgslcblas -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ccfindR.buildbin-libdir/00LOCK-ccfindR/00new/ccfindR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: ccfindR
*** installing help indices
converting help for package 'ccfindR'
finding HTML links ... done
assignCelltype html
basis-scNMFSet-method html
basis-set-scNMFSet-method html
basis-set html
basis html
build_tree html
ccfindR html
cell_map html
cluster_id html
coeff-scNMFSet-method html
coeff-set-scNMFSet-method html
coeff-set html
coeff html
colData-scNMFSet-method html
colData-set-scNMFSet-ANY-method html
counts-scNMFSet-method html
counts-set-scNMFSet-method html
dbasis-scNMFSet-method html
dbasis-set-scNMFSet-method html
dbasis-set html
dbasis html
dcoeff-scNMFSet-method html
dcoeff-set-scNMFSet-method html
dcoeff-set html
dcoeff html
factorize html
feature_map html
filter_cells html
filter_genes html
gene_map html
measure-scNMFSet-method html
measure-set-scNMFSet-method html
measure-set html
measure html
meta_gene.cv html
meta_genes html
newick html
normalize_count html
optimal_rank html
plot_genes html
plot_tree html
finding level-2 HTML links ... done
ranks-scNMFSet-method html
ranks-set-scNMFSet-method html
ranks-set html
ranks html
read_10x html
remove_zeros html
rename_tips html
rowData-scNMFSet-method html
rowData-set-scNMFSet-method html
scNMFSet-class html
scNMFSet html
show-scNMFSet-method html
simulate_data html
simulate_whx html
subset-methods html
vb_factorize html
visualize_clusters html
write_10x html
write_meta html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ccfindR' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c vbnmf_update.cpp -o vbnmf_update.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ccfindR.dll tmp.def RcppExports.o vbnmf_update.o -lgsl -lgslcblas -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ccfindR.buildbin-libdir/ccfindR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ccfindR' as ccfindR_1.6.0.zip
* DONE (ccfindR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ccfindR' successfully unpacked and MD5 sums checked