Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:07:13 -0400 (Wed, 15 Apr 2020).
Package 38/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
agilp 3.18.0 Benny Chain
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: agilp |
Version: 3.18.0 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:agilp.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings agilp_3.18.0.tar.gz |
StartedAt: 2020-04-15 01:27:45 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 01:27:59 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 14.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: agilp.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:agilp.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings agilp_3.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/agilp.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘agilp/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘agilp’ version ‘3.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘agilp’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE AALoess: no visible global function definition for ‘read.table’ AALoess: no visible global function definition for ‘loess’ AALoess: no visible global function definition for ‘predict’ AALoess: no visible global function definition for ‘write.table’ AALoess: no visible global function definition for ‘hist’ AAProcess: no visible global function definition for ‘read.table’ AAProcess: no visible global function definition for ‘write.table’ Baseline: no visible global function definition for ‘read.table’ Baseline: no visible global function definition for ‘write.table’ Equaliser: no visible global function definition for ‘read.table’ Equaliser: no visible global function definition for ‘write.table’ IDswop: no visible global function definition for ‘read.table’ IDswop: no visible binding for global variable ‘sd’ IDswop: no visible global function definition for ‘write.table’ Loader: no visible global function definition for ‘read.table’ Loader: no visible global function definition for ‘write.table’ filenamex: no visible global function definition for ‘write.table’ Undefined global functions or variables: hist loess predict read.table sd write.table Consider adding importFrom("graphics", "hist") importFrom("stats", "loess", "predict", "sd") importFrom("utils", "read.table", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.10-bioc/meat/agilp.Rcheck/00check.log’ for details.
agilp.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL agilp ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘agilp’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (agilp)
agilp.Rcheck/agilp-Ex.timings
name | user | system | elapsed | |
AALoess | 0.096 | 0.004 | 0.130 | |
AAProcess | 0.072 | 0.000 | 0.092 | |
Baseline | 0.06 | 0.00 | 0.06 | |
Equaliser | 0.072 | 0.000 | 0.071 | |
IDswop | 0.424 | 0.004 | 0.535 | |
Loader | 0.124 | 0.008 | 0.131 | |
filenamex | 0.000 | 0.000 | 0.003 | |