Guillem Rigaill
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ITALICS |
| Branch: RELEASE_3_10 |
| Last Commit: 1ccbc22 |
| Last Changed Date: 2019-10-29 13:07:57 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:30 -0400 (Wed, 15 Apr 2020).
| Package 873/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ITALICS 2.46.0 Guillem Rigaill
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ITALICS |
| Version: 2.46.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ITALICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ITALICS_2.46.0.tar.gz |
| StartedAt: 2020-04-15 04:11:38 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 04:15:10 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 212.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ITALICS.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ITALICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ITALICS_2.46.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ITALICS.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ITALICS/DESCRIPTION' ... OK * this is package 'ITALICS' version '2.46.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ITALICS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'affxparser' 'GLAD' 'oligo' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'ITALICSData' 'pd.mapping50k.xba240' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE trainITALICS: warning in list.files(dir, full.name = TRUE): partial argument match of 'full.name' to 'full.names' * checking Rd files ... NOTE prepare_Rd: GLAD.GLAD.Rd:33: Dropping empty section \keyword prepare_Rd: ITALICSNew.Rd:82: Dropping empty section \keyword prepare_Rd: ITALICSTrain.Rd:43: Dropping empty section \keyword prepare_Rd: Model.GetConfDat.Rd:23: Dropping empty section \keyword prepare_Rd: Model.GetCorrection.Rd:20: Dropping empty section \keyword prepare_Rd: Model.GetEffet.Rd:20: Dropping empty section \keyword prepare_Rd: Model.GetModel.Rd:21: Dropping empty section \keyword prepare_Rd: Model.GetResidu.Rd:18: Dropping empty section \keyword prepare_Rd: New.AddInfo.Rd:24: Dropping empty section \keyword prepare_Rd: New.fromQuartetToSnp.Rd:31: Dropping empty section \keyword prepare_Rd: New.fromQuartetToSnp.Rd:25: Dropping empty section \examples prepare_Rd: New.fromSnpToQuartet.Rd:25: Dropping empty section \keyword prepare_Rd: New.getQuartet.Rd:27: Dropping empty section \keyword prepare_Rd: New.getSnpInfo.Rd:25: Dropping empty section \keyword prepare_Rd: New.readQuartetCopyNb.Rd:23: Dropping empty section \keyword * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ITALICS.Rcheck/00check.log' for details.
ITALICS.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ITALICS_2.46.0.tar.gz && rm -rf ITALICS.buildbin-libdir && mkdir ITALICS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ITALICS.buildbin-libdir ITALICS_2.46.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ITALICS_2.46.0.zip && rm ITALICS_2.46.0.tar.gz ITALICS_2.46.0.zip
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install for i386
* installing *source* package 'ITALICS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
** help
*** installing help indices
converting help for package 'ITALICS'
finding HTML links ... done
GLAD.GLAD html
ITALICSNew html
ITALICSTrain html
Model.GetConfDat html
Model.GetCorrection html
Model.GetEffet html
Model.GetModel html
Model.GetResidu html
New.AddInfo html
New.fromQuartetToSnp html
New.fromSnpToQuartet html
New.getQuartet html
New.getSnpInfo html
New.readQuartetCopyNb html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ITALICS' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
* MD5 sums
packaged installation of 'ITALICS' as ITALICS_2.46.0.zip
* DONE (ITALICS)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ITALICS' successfully unpacked and MD5 sums checked
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ITALICS.Rcheck/examples_i386/ITALICS-Ex.timings
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ITALICS.Rcheck/examples_x64/ITALICS-Ex.timings
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