Venkatraman E. Seshan
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/DNAcopy |
| Branch: RELEASE_3_10 |
| Last Commit: 8781fcb |
| Last Changed Date: 2019-10-29 13:07:29 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:16:58 -0400 (Wed, 15 Apr 2020).
| Package 476/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DNAcopy 1.60.0 Venkatraman E. Seshan
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DNAcopy |
| Version: 1.60.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DNAcopy_1.60.0.tar.gz && rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DNAcopy.buildbin-libdir DNAcopy_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DNAcopy_1.60.0.zip && rm DNAcopy_1.60.0.tar.gz DNAcopy_1.60.0.zip |
| StartedAt: 2020-04-14 18:29:30 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:31:20 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 110.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DNAcopy_1.60.0.tar.gz && rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DNAcopy.buildbin-libdir DNAcopy_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DNAcopy_1.60.0.zip && rm DNAcopy_1.60.0.tar.gz DNAcopy_1.60.0.zip
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install for i386
* installing *source* package 'DNAcopy' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DNAcopy.buildbin-libdir/00LOCK-DNAcopy/00new/DNAcopy/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DNAcopy'
finding HTML links ... done
CNA html
DNAcopy-internal html
DNAcopy html
coriell html
cytoBand html
exon.segment html
getbdry html
glFrequency html
plot.DNAcopy html
plotSample html
segment html
segments.p html
segments.summary html
smooth.CNA html
subset.CNA html
subset.DNAcopy html
zoomIntoRegion html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DNAcopy' as DNAcopy_1.60.0.zip
* DONE (DNAcopy)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'DNAcopy' successfully unpacked and MD5 sums checked