Lambda Moses
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BUSpaRse |
| Branch: RELEASE_3_10 |
| Last Commit: 9b33e52 |
| Last Changed Date: 2019-10-29 13:11:56 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:01 -0400 (Wed, 15 Apr 2020).
| Package 211/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BUSpaRse 1.0.0 Lambda Moses
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BUSpaRse |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BUSpaRse_1.0.0.tar.gz && rm -rf BUSpaRse.buildbin-libdir && mkdir BUSpaRse.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUSpaRse.buildbin-libdir BUSpaRse_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BUSpaRse_1.0.0.zip && rm BUSpaRse_1.0.0.tar.gz BUSpaRse_1.0.0.zip |
| StartedAt: 2020-04-14 19:56:38 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:58:23 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 105.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BUSpaRse_1.0.0.tar.gz && rm -rf BUSpaRse.buildbin-libdir && mkdir BUSpaRse.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUSpaRse.buildbin-libdir BUSpaRse_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BUSpaRse_1.0.0.zip && rm BUSpaRse_1.0.0.tar.gz BUSpaRse_1.0.0.zip
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install for i386
* installing *source* package 'BUSpaRse' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mtune=core2 -c fill_cell_gene.cpp -o fill_cell_gene.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BUSpaRse.dll tmp.def RcppExports.o fill_cell_gene.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/i386 -ltbb -ltbbmalloc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BUSpaRse.buildbin-libdir/00LOCK-BUSpaRse/00new/BUSpaRse/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BUSpaRse'
finding HTML links ... done
EC2gene html
annot_circular html
finding level-2 HTML links ... done
check_char1 html
check_genome html
check_gff html
check_tag_present html
check_tx html
dot-get_velocity_files html
get_intron_flanks html
get_velocity_files html
make_sparse_matrix html
match_style html
read_count_output html
read_velocity_output html
save_tr2g_bustools html
sort_tr2g html
species2dataset html
standardize_tags html
sub_annot html
subset_annot html
tr2g_EnsDb html
tr2g_GRanges html
tr2g_TxDb html
tr2g_ensembl html
tr2g_fasta html
tr2g_gff3 html
tr2g_gtf html
tr2g_junction html
transcript2gene html
validate_velocity_input html
write_velocity_output html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BUSpaRse' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mtune=core2 -c fill_cell_gene.cpp -o fill_cell_gene.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BUSpaRse.dll tmp.def RcppExports.o fill_cell_gene.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BUSpaRse.buildbin-libdir/BUSpaRse/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BUSpaRse' as BUSpaRse_1.0.0.zip
* DONE (BUSpaRse)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BUSpaRse' successfully unpacked and MD5 sums checked