Package: les

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch les_1.3.0.tar.gz

StartedAt: 2011-06-22 03:46:38 -0700 (Wed, 22 Jun 2011)

EndedAt: 2011-06-22 03:48:42 -0700 (Wed, 22 Jun 2011)

EllapsedTime: 124.3 seconds

RetCode: 0

Status:  OK

CheckDir: les.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/les.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘les/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘les’ version ‘1.3.0’
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘les’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘les’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for "plot" from package "graphics" in package “les”
Creating a generic function for "summary" from package "base" in package “les”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘les.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded

* DONE (les)

name	user	system	elapsed
Les-class	0.003	0.000	0.004
Les	0.035	0.003	0.037
chi2	13.466	1.619	15.408
ci	27.439	0.132	27.899
estimate	1.022	0.103	1.144
export	0.000	0.001	0.001
les-package	41.030	0.232	42.384
plot	1.011	0.100	1.138
regions	1.024	0.099	1.170
threshold	1.010	0.098	1.131
weighting	0.008	0.001	0.011