Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 209/514HostnameOS / ArchBUILDCHECKBUILD BIN
GenomicRanges 1.6.7
Bioconductor Package Maintainer
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/GenomicRanges
Last Changed Rev: 62589 / Revision: 64395
Last Changed Date: 2012-02-06 13:58:15 -0800 (Mon, 06 Feb 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomicRanges
Version: 1.6.7
Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GenomicRanges.buildbin-libdir GenomicRanges_1.6.7.tar.gz
StartedAt: 2012-03-24 03:46:03 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 03:47:14 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 71.0 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicRanges_1.6.7.zip
PackageFileSize: 1.686 MiB

Command output


install for i386

* installing *source* package 'GenomicRanges' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:858:19: warning: 'width' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:344:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:312:7: note: 'OP' was declared here
cigar_utils.c:336:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:311:17: note: 'OPL' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:504:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:472:7: note: 'OP' was declared here
cigar_utils.c:496:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:471:17: note: 'OPL' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1207:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
transcript_utils.c:234:3: warning: 'nlocs' may be used uninitialized in this function [-Wuninitialized]
gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GenomicRangesIntroduction.Rnw' 
   'GenomicRangesUseCases.Rnw' 
   'summarizeOverlaps.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'GenomicRanges' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:858:19: warning: 'width' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1207:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
transcript_utils.c:234:3: warning: 'nlocs' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.6.7.zip

* DONE (GenomicRanges)