Package: CNAnorm

Version: 1.0.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch CNAnorm_1.0.0.tar.gz

StartedAt: 2012-01-09 02:13:26 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 02:14:33 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 66.7 seconds

RetCode: 0

Status:  OK

CheckDir: CNAnorm.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/CNAnorm.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CNAnorm/DESCRIPTION' ... OK
* this is package 'CNAnorm' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'CNAnorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'CNAnorm' ...
** libs
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c daxpy.f -o daxpy.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c ddot.f -o ddot.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c dgbfa.f -o dgbfa.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c dgbsl.f -o dgbsl.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c dscal.f -o dscal.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c dsmooth.f -o dsmooth.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c idamax.f -o idamax.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/CNAnorm.Rcheck/CNAnorm/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'CNAnorm.Snw' 
** testing if installed package can be loaded

* DONE (CNAnorm)

name	user	system	elapsed
CNAnorm-class	0.06	0.01	0.07
DerivData-class	0.02	0.00	0.02
InData-class	0.01	0.00	0.02
Params-class	0.02	0.00	0.01
addDNACopy-methods	1.39	0.00	1.39
addSmooth-methods	0.83	0.00	0.83
chrsAndpos-methods	0.01	0.00	0.02
dataFrame2object	0.02	0.00	0.01
discreteNorm-methods	0.05	0.00	0.05
exportTable-method	0.2	0.0	0.2
gcNorm-methods	0.66	0.00	0.66
peakPloidy	28.90	0.19	29.09
plotGenome-methods	1.25	0.02	1.27
plotPeaks-methods	0.06	0.00	0.06
ratio-methods	0.64	0.00	0.64
suggValid-methods	0.04	0.00	0.03
validation-methods	0.01	0.00	0.02