Package: spotSegmentation

Version: 1.33.0

Command: rm -rf spotSegmentation.buildbin-libdir && mkdir spotSegmentation.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spotSegmentation.buildbin-libdir spotSegmentation_1.33.0.tar.gz >spotSegmentation-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=spotSegmentation.buildbin-libdir --install="check:spotSegmentation-install.out" --force-multiarch --no-vignettes --timings spotSegmentation_1.33.0.tar.gz && mv spotSegmentation.buildbin-libdir/* spotSegmentation.Rcheck/ && rmdir spotSegmentation.buildbin-libdir

StartedAt: 2013-03-25 05:03:26 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 05:04:33 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 67.5 seconds

RetCode: 0

Status:  OK

CheckDir: spotSegmentation.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/spotSegmentation.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spotSegmentation/DESCRIPTION' ... OK
* this is package 'spotSegmentation' version '1.33.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spotSegmentation' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: plot.spotseg.Rd:23: Dropping empty section \author
prepare_Rd: plotBlockImage.Rd:20: Dropping empty section \author
prepare_Rd: spotgrid.Rd:21: Dropping empty section \details
prepare_Rd: spotgrid.Rd:33: Dropping empty section \note
prepare_Rd: spotgrid.Rd:34: Dropping empty section \author
prepare_Rd: spotseg.Rd:45: Dropping empty section \author
prepare_Rd: summary.spotseg.Rd:27: Dropping empty section \author
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [19s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
spotseg         6.12   0.00    6.12
summary.spotseg 5.91   0.02    5.93
plot.spotseg    5.71   0.00    5.71
** running examples for arch 'x64' ... [23s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
spotseg         8.31   0.01    8.33
plot.spotseg    6.93   0.02    6.94
summary.spotseg 6.55   0.00    6.55
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/spotSegmentation.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'spotSegmentation' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'spotSegmentation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spotSegmentation' as spotSegmentation_1.33.0.zip
* DONE (spotSegmentation)