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Package 284/658HostnameOS / ArchBUILDCHECKBUILD BIN
goseq 1.11.4
Matthew Young
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/goseq
Last Changed Rev: 74260 / Revision: 74774
Last Changed Date: 2013-03-12 18:33:37 -0700 (Tue, 12 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: goseq
Version: 1.11.4
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch goseq_1.11.4.tar.gz
StartedAt: 2013-03-25 02:51:24 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:58:09 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 404.2 seconds
RetCode: 0
Status:  OK 
CheckDir: goseq.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/goseq.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'goseq/DESCRIPTION' ... OK
* this is package 'goseq' version '1.11.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'goseq' can be installed ... [28s/28s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [132s/138s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
goseq     47.200  5.594  53.122
getgo     22.566  2.053  24.720
plotPWF   12.519  3.379  16.002
nullp     10.511  3.196  13.814
getlength  6.939  2.914  15.051
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

goseq.Rcheck/00install.out:

* installing *source* package 'goseq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'goseq.Rnw' 
** testing if installed package can be loaded
* DONE (goseq)

goseq.Rcheck/goseq-Ex.timings:

nameusersystemelapsed
genes0.0310.0070.039
getgo22.566 2.05324.720
getlength 6.939 2.91415.051
goseq47.200 5.59453.122
makespline0.0810.0120.094
nullp10.511 3.19613.814
plotPWF12.519 3.37916.002