BioC 2.12: CHECK report for RBGL on petty

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/RBGL.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RBGL/DESCRIPTION' ... OK
* this is package 'RBGL' version '1.35.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'RBGL' can be installed ... [150s/157s] WARNING
Found the following significant warnings:
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
See '/Users/biocbuild/bbs-2.12-bioc/meat/RBGL.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/RBGL.Rcheck/00check.log'
for details.

* installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c bbc.cpp -o bbc.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c cliques.cpp -o cliques.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c dominatorTree.cpp -o dominatorTree.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c hcs.cpp -o hcs.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c incrConnComp.cpp -o incrConnComp.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:74: warning: unused variable 'child_index'
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c interfaces.cpp -o interfaces.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c minST.cpp -o minST.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::discharge(typename boost::graph_traits<Graph>::vertex_descriptor) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>&, long unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int>, FlowValue = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, int>::m_src' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c ordering.cpp -o ordering.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c planar.cpp -o planar.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:161: warning: comparison between signed and unsigned integer expressions
planar.cpp:165: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:256: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:369: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:461: warning: unused variable 'i'
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder<Graph, MateMap, VertexIndexMap>::augment_matching() [with Graph = R_adjacency_list<boost::undirectedS, int>, MateMap = long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > >, EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, int&, long unsigned int, boost::property<boost::edge_index_t, int, boost::no_property>, boost::edge_index_t>, Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >&>, ForwardIterator = __gnu_cxx::__normal_iterator<long unsigned int*, std::vector<long unsigned int, std::allocator<long unsigned int> > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<coord_t*, std::vector<coord_t, std::allocator<coord_t> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp:219: warning: 'next_to_rightmost' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >&>, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c shortestPath.cpp -o shortestPath.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c sna.cpp -o sna.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c wavefront.cpp -o wavefront.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/RBGL.Rcheck/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'RBGL.Rnw' 
** testing if installed package can be loaded
* DONE (RBGL)

name	user	system	elapsed
FileDep	0.804	0.050	0.857
astarSearch	0.020	0.011	0.031
bandwidth	0.036	0.012	0.047
bccluster	0.094	0.014	0.108
bellman.ford.sp	0.029	0.012	0.042
betweenness	0.02	0.01	0.03
bfs	0.035	0.016	0.051
biConnComp	0.027	0.012	0.038
chrobakPayneStraightLineDrawing	0.032	0.016	0.049
clusteringCoef	0.022	0.010	0.033
clusteringCoefAppr	0.026	0.011	0.037
coloring	0.018	0.009	0.027
connectedComp	0.033	0.012	0.072
dag.sp	0.022	0.009	0.033
dijkstra.sp	0.046	0.018	0.066
dominatorTree	0.023	0.011	0.035
edgeConn	0.018	0.009	0.028
edmondsMaxCardinalityMatching	0.120	0.031	0.151
edmondsOptimumBranching	0.030	0.012	0.043
extractPath	0.014	0.007	0.021
floyd.warshall.all.pairs.sp	0.026	0.011	0.036
gprofile	0.021	0.011	0.032
graphGenerator	0.012	0.009	0.021
highlyConnSG	0.032	0.012	0.044
incrConnComp	0.031	0.016	0.047
is.triangulated	0.038	0.017	0.058
isKuratowskiSubgraph	0.050	0.024	0.078
isStraightLineDrawing	0.049	0.021	0.071
isomorphism	0.042	0.020	0.066
johnson.all.pairs.sp	0.027	0.013	0.040
kCliques	0.027	0.012	0.040
kCores	0.088	0.020	0.112
lambdaSets	0.025	0.010	0.035
layout	0.069	0.010	0.079
makeBiconnectedPlanar	0.033	0.015	0.049
makeConnected	0.027	0.013	0.040
makeMaximalPlanar	0.030	0.014	0.045
maxClique	0.031	0.013	0.044
maxFlow	0.030	0.011	0.043
minCut	0.017	0.009	0.026
mstree.kruskal	0.048	0.017	0.066
mstree.prim	0.026	0.011	0.037
ordering	0.028	0.011	0.041
planarCanonicalOrdering	0.038	0.019	0.059
planarFaceTraversal	0.043	0.022	0.066
removeSelfLoops	0.028	0.011	0.042
separates	0.031	0.010	0.041
sp.between	0.120	0.017	0.138
strongComp	0.030	0.012	0.043
transClosure	0.021	0.009	0.031
transitivity	0.018	0.010	0.028
tsort	0.038	0.009	0.049
wavefront	0.024	0.014	0.040

Summary

Command output