Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 15/658HostnameOS / ArchBUILDCHECKBUILD BIN
AffyCompatible 1.19.4
Martin Morgan
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AffyCompatible
Last Changed Rev: 74771 / Revision: 74774
Last Changed Date: 2013-03-24 14:20:12 -0700 (Sun, 24 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: AffyCompatible
Version: 1.19.4
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch AffyCompatible_1.19.4.tar.gz
StartedAt: 2013-03-25 00:59:10 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:03:14 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 244.0 seconds
RetCode: 0
Status:  OK 
CheckDir: AffyCompatible.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/AffyCompatible.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.19.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'AffyCompatible' can be installed ... [44s/46s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [26s/34s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
NetAffxResource-class 13.415  0.268  21.247
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

AffyCompatible.Rcheck/00install.out:

* installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MAGEAndARR.Rnw' 
   'NetAffxResource.Rnw' 
** testing if installed package can be loaded
* DONE (AffyCompatible)

AffyCompatible.Rcheck/AffyCompatible-Ex.timings:

nameusersystemelapsed
AffyCompatible-class0.0070.0060.013
NetAffxResource-class13.415 0.26821.247
readArr0.7500.0470.801
readMage3.0020.0163.018
readNetAffx0.0020.0050.007
readXml0.1270.0130.140
xclass0.1760.0180.193
zzz-ARRCompatibility-class0.0130.0200.033
zzz-DTTCompatibility-class0.5370.5181.068
zzz-NetAffxCompatibility-class0.0170.0130.030