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Package 239/556HostnameOS / ArchBUILDCHECKBUILD BIN
GlobalAncova 3.25.0
Manuela Hummel
Snapshot Date: 2012-05-08 18:22:12 -0700 (Tue, 08 May 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GlobalAncova
Last Changed Rev: 64680 / Revision: 65783
Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: GlobalAncova
Version: 3.25.0
Command: rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GlobalAncova_3.25.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R GlobalAncova.buildbin-libdir
StartedAt: 2012-05-09 07:34:19 -0700 (Wed, 09 May 2012)
EndedAt: 2012-05-09 07:34:44 -0700 (Wed, 09 May 2012)
EllapsedTime: 24.9 seconds
RetCode: 0
Status:  OK 
PackageFile: GlobalAncova_3.25.0.tgz
PackageFileSize: 1.111 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GlobalAncova.buildbin-libdir GlobalAncova_3.25.0.tar.gz'
>>>>>>> 

* installing *source* package 'GlobalAncova' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268: warning: 'ord_perm' may be used uninitialized in this function
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166: warning: 'ord_perm' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c ludcmp.c -o ludcmp.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c matrix.c -o matrix.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
  A specification for class "data.frameOrNULL" in package 'globaltest' seems equivalent to one from package 'Biobase' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices
** installing vignettes
   'GlobalAncova.rnw' 
   'GlobalAncovaDecomp.rnw' 
** testing if installed package can be loaded
Warning in .simpleDuplicateClass(def, prev) :
  A specification for class "data.frameOrNULL" in package 'globaltest' seems equivalent to one from package 'Biobase' and is not turning on duplicate class definitions for this class

* DONE (GlobalAncova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386/GlobalAncova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386/GlobalAncova.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GlobalAncova.buildbin-libdir --libs-only GlobalAncova_3.25.0.tar.gz'
>>>>>>> 

* installing *source* package 'GlobalAncova' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c GlobalAncova.c -o GlobalAncova.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c ludcmp.c -o ludcmp.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c matrix.c -o matrix.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/ppc

* DONE (GlobalAncova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GlobalAncova.buildbin-libdir/GlobalAncova/libs/ppc/GlobalAncova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/ppc/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/ppc/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/ppc/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/ppc/GlobalAncova.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GlobalAncova.buildbin-libdir --libs-only GlobalAncova_3.25.0.tar.gz'
>>>>>>> 

* installing *source* package 'GlobalAncova' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c GlobalAncova.c -o GlobalAncova.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c ludcmp.c -o ludcmp.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c matrix.c -o matrix.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/x86_64

* DONE (GlobalAncova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GlobalAncova.buildbin-libdir/GlobalAncova/libs/x86_64/GlobalAncova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/x86_64/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/x86_64/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/x86_64/GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs/x86_64/GlobalAncova.so"