GenomicRanges 1.10.7
Bioconductor Package Maintainer
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/GenomicRanges | | Last Changed Rev: 73777 / Revision: 74773 | | Last Changed Date: 2013-02-27 09:52:34 -0800 (Wed, 27 Feb 2013) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | [ OK ] |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
install for i386
* installing *source* package 'GenomicRanges' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:779:19: warning: 'width' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:318:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:286:7: note: 'OP' was declared here
cigar_utils.c:310:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:285:17: note: 'OPL' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:466:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:434:7: note: 'OP' was declared here
cigar_utils.c:458:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:433:17: note: 'OPL' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1130:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
transcript_utils.c:236:3: warning: 'nlocs' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'GenomicRangesIntroduction.Rnw'
'GenomicRangesUseCases.Rnw'
'OverlapEncodings.Rnw'
'summarizeOverlaps.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'GenomicRanges' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:779:19: warning: 'width' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1130:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"D:/biocbld/bbs-2.11-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
transcript_utils.c:236:3: warning: 'nlocs' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.10.7.zip
* DONE (GenomicRanges)