VanillaICE 1.0.2
Robert Scharpf
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/VanillaICE | | Last Changed Rev: 27988 / Revision: 30807 | | Last Changed Date: 2007-10-14 10:06:21 -0700 (Sun, 14 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ OK ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/VanillaICE.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* this is package 'VanillaICE' version '1.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'VanillaICE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating VanillaICE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating VanillaICE-manual.tex ... OK
* checking VanillaICE-manual.tex ... OK
* Installing *source* package 'VanillaICE' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
** help
>>> Building/Updating help pages for package 'VanillaICE'
Formats: text html latex example
HmmSnpCallSet-class text html latex example
HmmSnpCopyNumberSet-class text html latex example
HmmSnpSet-class text html latex example
ParHSet-class text html latex example
ParHmmSnpCallSet-class text html latex example
ParHmmSnpCopyNumberSet-class text html latex example
ParHmmSnpSet-class text html latex example
bind text html latex example
breakpoints text html latex example
byArm text html latex example
calculateEmissionProbability text html latex example
callEmission text html latex example
callsIce text html latex example
chromosome1 text html latex example
chromosomeArm text html latex example
copyNumberIce text html latex example
distance text html latex example
emissionProbability text html latex example
getCallEmission text html latex example
getCopyNumberLocation text html latex example
getCopyNumberScale text html latex example
getHapmapProbabilities text html latex example
getInitialStateProbability text html latex example
getLohProbability text html latex example
getTransitionProbability text html latex example
hSet-class text html latex example
hapmapProbabilities text html latex example
hmm text html latex example
hmmBySample text html latex example
initialStateProbability text html latex example
isMissing text html latex example
likelihood text html latex example
locationCopyNumber text html latex example
numberStates text html latex example
pCHOM text html latex example
plotPredictions text html latex example
predictions text html latex example
scaleCopyNumber text html latex example
stateNames text html latex example
transitionProbability text html latex example
viterbi text html latex example
** building package indices ...
* DONE (VanillaICE)