\HeaderA{ath1121501GO2ALLPROBES}{Map Between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers}{ath1121501GO2ALLPROBES}
\keyword{datasets}{ath1121501GO2ALLPROBES}
\begin{Description}\relax
ath1121501GO2ALLPROBES is an R environment that provides mappings
between a given GO id and all manufacturer ids.
\end{Description}
\begin{Details}\relax
Each GO term maps to a named vector of manufacturer ids. The name
associated with each manufacturer id corresponds to the evidence code
for that GO id. The evidence code indicates what kind of evidence
supports the association between the GO and Entrez Gene ids. Evidence
codes currently in use include:

IMP - inferred from mutant phenotype  

IGI - inferred from genetic interaction

IPI - inferred from physical interaction  

ISS - inferred from sequence similarity  

IDA - inferred from direct assay  

IEP - inferred from expression pattern  

IEA - inferred from electronic annotation  

TAS - traceable author statement  

NAS - non-traceable author statement  

ND - no biological data available  

IC - inferred by curator

A GO id may be mapped to the same manufacturer id more than once but the
evidence code can be different. Mappings between Gene Ontology ids and
Gene Ontology terms and other information are available in a separate
data package named GO.  

Mappings were based on data provided:

Tair: \url{ftp://ftp.arabidopsis.org/home/tair/Genes/gene_aliases.20041105}
Tair: \url{ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR_sequenced_genes}
Tair: \url{ftp://ftp.arabidopsis.org/home/tair/Genes/Gene_Anatomy/ATH_Anatomy.20040209.txt}
Built: N/A

Package built Tue May 17 18:45:34 2005
\end{Details}
\begin{References}\relax
\url{ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/}
\end{References}
\begin{Examples}
\begin{ExampleCode}
    # Convert to a list
    xx <- as.list(ath1121501GO2ALLPROBES)
    if(length(xx) > 0){
        # Gets the probe ids for the top 2nd and 3nd GO ids
        goids <- xx[2:3]
        # Gets all the probe ids for the first element of goids
        goids[[1]]
        # Evidence code for the mappings
        names(goids[[1]])
    }
\end{ExampleCode}
\end{Examples}

