ath1121501PATH2PROBE {ath1121501} | R Documentation

## Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers

### Description

ath1121501PATH2PROBE is an R environment that provides mappings between KEGG ids and manufacturer ids.

### Details

Each KEGG id is mapped to a named vector of manufacturer ids. The name represents the KEGG id and the vector contains all manufacturer ids that are found in that particular pathway. An `NA` is reported for any KEGG id that cannot be mapped to any manufacturer ids.

Pathway name for a given pathway id can be obtained using the KEGG data package that can either be built using AnnBuilder or downloaded from Bioconductor http://www.bioconductor.org.

Graphic presentations of pathways are searchable at http://www.genome.ad.jp/kegg/pathway.html using pathway ids as keys.

Mappings were based on data provided by:

Tair: ftp://ftp.arabidopsis.org/home/tair/Pathways/aracyc_dump_20050412 Built: N/A

Tair: ftp://ftp.arabidopsis.org/home/tair/Genes/gene_aliases.20041105 Tair: ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR_sequenced_genes Tair: ftp://ftp.arabidopsis.org/home/tair/Genes/Gene_Anatomy/ATH_Anatomy.20040209.txt Built: N/A

Package built Tue May 17 18:45:34 2005

### References

http://www.genome.ad.jp/kegg/

### Examples

        # Convert the environment to a list
        xx <- as.list(ath1121501PATH2PROBE)
        # Remove pathway ids that do not map to any probe id
        xx <- xx[!is.na(xx)]
        if(length(xx) > 0){
            # The probe ids for the first two elements of XX
            xx[1:2]
            # Get the first one
            xx[[1]]
        }

[Package ath1121501 version 1.8.2 Index]