ath1121501PMID          package:ath1121501          R Documentation

_M_a_p _b_e_t_w_e_e_n _M_a_n_u_f_a_c_t_u_r_e_r _I_d_e_n_t_i_f_i_e_r_s _a_n_d _P_u_b_M_e_d _I_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     ath1121501PMID is an R environment that provides mappings between
     manufacturer ids and PubMed ids.

_D_e_t_a_i_l_s:

     Each manufacturer id is mapped to a named vector of PubMed ids.
     The name associated with each vector corresponds to the
     manufacturer id. The length of the vector may be one or greater,
     depending on how many PubMed ids a given manufacturer id is mapped
     to. An 'NA' is reported for any manufacturer id that cannot be
     mapped to a PubMed id.

     Titles, abstracts, and possibly full texts of articles can be
     obtained from PubMed by providing a valid PubMed id. The pubmed
     function of annotate can also be used for the same purpose.

     Mappings were based on data provided by:

     Tair: <URL:
     ftp://ftp.arabidopsis.org/home/tair/Genes/gene_aliases.20041105>
     Tair: <URL:
     ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR_sequenced_genes>
     Tair: <URL:
     ftp://ftp.arabidopsis.org/home/tair/Genes/Gene_Anatomy/ATH_Anatomy
     .20040209.txt> Built: N/A

     Package built Tue May 17 18:45:34 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(ath1121501PMID)
         if(length(xx) > 0){
             # The probe ids for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
             if(interactive() && !is.null(xx[[1]]) && !is.na(xx[[1]])
                && require(annotate)){
                 # Gets article information as XML files
                 xmls <- pubmed(xx[[1]], disp = "data")
                 # Views article information using a browser
                 pubmed(xx[[1]], disp = "browser")
             }
         }

