# Reference

## All functions
`downloadPathwayArchive()` | Download Pathway Archive
`findPathwayIdsByLiterature()` | Find Pathway WPIDs By Literature
`findPathwayIdsByText()` | Find Pathway WPIDs By Text
`findPathwayIdsByXref()` | Find Pathway WPIDs By Xref
`findPathwayNamesByLiterature()` | Find Pathway Names By Literature
`findPathwayNamesByText()` | Find Pathway Names By Text
`findPathwayNamesByXref()` | Find Pathway Names By Xref
`findPathwayUrlsByLiterature()` | Find Pathway URLs By Literature
`findPathwayUrlsByText()` | Find Pathway URLs By Text
`findPathwayUrlsByXref()` | Find Pathway URLs By Xref
`findPathwaysByLiterature()` | Find Pathways By Literature
`findPathwaysByText()` | Find Pathways By Text
`findPathwaysByXref()` | Find Pathways By Xref
`getColoredPathway()` | Defunct: Get Colored Pathway
`getCurationTagNames()` | Get Curation Tag Names on a Pathway
`getCurationTags()` | Get Curation Tags on a Pathway
`getEveryCurationTag()` | Get Every Instance of a Curation Tag
`getOntologyTermIds()` | Get Ontology Term IDs by Pathway
`getOntologyTermNames()` | Get Ontology Term Names by Pathway
`getOntologyTerms()` | Get Ontology Terms by Pathway
`getPathway()` | Get Pathway
`getPathwayHistory()` | Get Pathway History
`getPathwayIdsByCurationTag()` | Get Pathway WPIDs by Curation Tag
`getPathwayIdsByOntologyTerm()` | Get Pathway WPIDs by Ontology Term
`getPathwayIdsByParentOntologyTerm()` | Get Pathway WPIDs by Parent Ontology Term
`getPathwayInfo()` | Get Pathway Info
`getPathwaysByCurationTag()` | Get Pathways by Curation Tag
`getPathwaysByOntologyTerm()` | Get Pathways by Ontology Term
`getPathwaysByParentOntologyTerm()` | Get Pathways by Parent Ontology Term
`getRecentChanges()` | Get Recent Changes
`getRecentChangesIds()` | Get WPIDs of Recent Changes
`getRecentChangesNames()` | Get Pathway Names of Recent Changes
`getXrefList()` | Get Xref List
`listOrganisms()` | List Organisms
`listPathwayIds()` | List Pathway WPIDs
`listPathwayNames()` | List Pathway Names
`listPathwayUrls()` | List Pathway URLs
`listPathways()` | List Pathways
`readPathwayGMT()` | Read Pathway GMT File
`wikipathwaysAPI()` | Open Swagger docs for WikiPathways API
`wikipathwaysGET()` | WikiPathways GET
`writeGMT()` | Write GMT File