pageRank
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
Bioconductor version: Release (3.20)
Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.
Author: Hongxu Ding [aut, cre, ctb, cph]
Maintainer: Hongxu Ding <hd2326 at columbia.edu>
Citation (from within R, enter
citation("pageRank")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pageRank")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pageRank")| introduction.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneTarget, Network, Software, StatisticalMethod |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL-2 |
| Depends | R (>= 4.0) |
| Imports | GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics |
| System Requirements | |
| URL | https://github.com/hd2326/pageRank |
| Bug Reports | https://github.com/hd2326/pageRank/issues |
See More
| Suggests | bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pageRank_1.16.0.tar.gz |
| Windows Binary (x86_64) | pageRank_1.16.0.zip (64-bit only) |
| macOS Binary (x86_64) | pageRank_1.16.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pageRank |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pageRank |
| Bioc Package Browser | https://code.bioconductor.org/browse/pageRank/ |
| Package Short Url | https://bioconductor.org/packages/pageRank/ |
| Package Downloads Report | Download Stats |