## ----echo=FALSE--------------------------------------------------------------- library(gDRimport) log_level <- futile.logger::flog.threshold("ERROR") ## ----------------------------------------------------------------------------- # primary test data td1 <- get_test_data() summary(td1) td1 # test data in Tecan format td2 <- get_test_Tecan_data() summary(td2) # test data in D300 format td3 <- get_test_D300_data() summary(td3) # test data obtained from EnVision td4 <- get_test_EnVision_data() summary(td4) ## ----------------------------------------------------------------------------- ml <- load_manifest(manifest_path(td1)) summary(ml) t_df <- load_templates(template_path(td1)) summary(t_df) r_df <- suppressMessages(load_results(result_path(td1))) summary(r_df) l_tbl <- suppressMessages( load_data(manifest_path(td1), template_path(td1), result_path(td1))) summary(l_tbl) ## ----echo=TRUE, eval=FALSE---------------------------------------------------- # convert_LEVEL5_prism_to_gDR_input("path_to_file") ## ----echo=TRUE, eval=FALSE---------------------------------------------------- # convert_LEVEL6_prism_to_gDR_input("prism_data_path", "cell_line_data_path", "treatment_data_path") ## ----sessionInfo-------------------------------------------------------------- sessionInfo()