VERSION 1.8.0
-------------

NEW FEATURES

    o Add Taxonomy ID to TxDb object returned by makeTxDbFromEnsembl().
      Like for other makeTxDbFrom*() functions, the new 'taxonomyId'
      argument of makeTxDbFromEnsembl() is set to NA by default.
      So if the user doesn't supply a Taxonomy ID via the argument,
      GenomeInfoDb:::lookup_tax_id_by_organism() is used to retrieve
      the taxonomy ID for the supplied 'organism'. Otherwise
      GenomeInfoDb:::check_tax_id() is used to check the user-supplied
      taxonomy ID.
      Contributed by I-Hsuan Lin.

DEPRECATED AND DEFUNCT

    o Deprecate functions supportedUCSCFeatureDbTracks() and
      supportedUCSCFeatureDbTables(). Use list_UCSC_tracks() from package
      UCSC.utils instead.

    o Deprecate the 'track', 'url', and 'goldenPath.url' arguments
      of functions makeFeatureDbFromUCSC() and UCSCFeatureDbTableSchema().

    o Utility function supportedMiRBaseBuildValues(), argument 'miRBaseBuild',
      and argument 'port' are now gone after being defunct in BioC 3.22.
      Note that 'miRBaseBuild' and 'port' were arguments of several functions
      in the txdbmaker package.


VERSION 1.6.0
-------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Add Seqinfo to Depends and move GenomeInfoDb to Imports.

    o Drop mirbase.db from Suggests (package got removed from BioC 3.22
      after being deprecated in BioC 3.21). As a consequence, utility
      function supportedMiRBaseBuildValues() and argument 'miRBaseBuild'
      are now defunct (the latter is an argument of various functions in
      the package).

DEPRECATED AND DEFUNCT

    o Utility function supportedMiRBaseBuildValues() and argument
      'miRBaseBuild' are defunct (the latter is an argument of various
      functions in the package).


VERSION 1.4.0
-------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Add genome version to TxDb returned by makeTxDbFromEnsembl().
      Author: Robert Castelo

BUG FIXES

    o Fix bug in supportedUCSCtables(). See commit 05d278f for the details.


VERSION 1.2.0
-------------

SIGNIFICANT USER-VISIBLE CHANGES

    o Adjust makeTxDbFromBiomart() examples to reflect breaking change
      in Ensembl 113. See commit a5a885d for the details.

BUG FIXES

    o Small fix to internal helper .Ensembl_getMySQLCoreDir(). See commit
      aa586a6 for the details.


VERSION 1.0.0
-------------

    o The txdbmaker package is a spin-off from the GenomicFeatures package.
      It includes the following functions, all of them originally from the
      GenomicFeatures package:
        - browseUCSCtrack
        - getChromInfoFromBiomart
        - makeFDbPackageFromUCSC
        - makeFeatureDbFromUCSC
        - makePackageName
        - makeTxDb
        - makeTxDbFromBiomart
        - makeTxDbFromEnsembl
        - makeTxDbFromGFF
        - makeTxDbFromGRanges
        - makeTxDbFromUCSC
        - makeTxDbPackage
        - makeTxDbPackageFromBiomart
        - makeTxDbPackageFromUCSC
        - supportedMiRBaseBuildValues
        - supportedUCSCFeatureDbTables
        - supportedUCSCFeatureDbTracks
        - supportedUCSCtables
        - UCSCFeatureDbTableSchema