Changes in version 1.19.6 (2024-09-19) + added a dbr.per1k parameter to set doublet rates per thousands of cells, updated the default from 1 to 0.8\% + fixed some issues stemming from the cxds score in some corner cases (absence of inverse correlation between genes) + updated documentation Changes in version 1.13.14 (2023-06-19) + reduced the default minimum number of artificial doublets to improve call robustness in very small datasets. Changes in version 1.13.10 (2023-03-23) + fixed serializing error in multithreading large single samples + computed thresholds now reported in metadata Changes in version 1.13.7 (2023-01-09) + added possibility to provide the genes/features to use, updated docs Changes in version 1.13.4 (2022-11-21) + fixed bug in samples reporting in split mode (doesn't affect doublets scores) Changes in version 1.13.3 (2022-11-20) + updated default parameters according to https://arxiv.org/abs/2211.00772 Changes in version 1.13.2 (2022-11-11) + added two-pass mode for feature aggregation Changes in version 1.9.11 (2022-04-16) + fixed larger kNN size Changes in version 1.9.9 (2022-04-9) + improved amulet reimplementation + added clamulet and scATAC vignette Changes in version 1.9.1 (2021-11-02) + added reimplementation of the amulet method for scATAC-seq Changes in version 1.7.3 (2021-07-26) + scDblFinder now includes both cluster-based and random modes for artificial doublet generation + thresholding has been streamlined + default parameters have been optimized using benchmark datasets + added the `directDblClassification` method Changes in version 1.5.11 (2021-01-19) + scDblFinder now provides doublet enrichment tests + doublet generation and default parameters have been further optimized Changes in version 1.3.25 (2020-10-26) + scDblFinder has important improvements on speed, robustness and accuracy + in additional to doublet calls, scDblFinder reports the putative origin (combination of clusters) of doublets Changes in version 1.3.19 (2020-08-06) + scDblFinder now hosts the doublet detection methods formerly part of `scran`