Change history of package podkat: ================================= Version 1.35.1: - changed e-mail address of maintainer - updated README.md and formatting of package vignette - updated CITATION - updated references in documentation Version 1.35.0: - new branch for Bioconductor 3.19 devel Version 1.34.0: - release as part of Bioconductor 3.18 Version 1.33.0: - new branch for Bioconductor 3.18 devel Version 1.32.0: - release as part of Bioconductor 3.17 Version 1.31.1: - changed arguments in qqplot() method for compatibility with new version of the standard function in the 'stats' package (added dummy arguments to avoid errors) - minor adaptations of help pages Version 1.31.0: - new branch for Bioconductor 3.17 devel Version 1.30.0: - release as part of Bioconductor 3.16 Version 1.29.0: - new branch for Bioconductor 3.16 devel Version 1.28.0: - release as part of Bioconductor 3.15 Version 1.27.0: - new branch for Bioconductor 3.15 devel Version 1.26.0: - release as part of Bioconductor 3.14 Version 1.25.1: - adjusted NAMESPACE to account for changes in BiocGenerics package Version 1.25.0: - new branch for Bioconductor 3.14 devel Version 1.24.0: - release as part of Bioconductor 3.13 Version 1.23.2: - updates and documentation to vignette in order to adapt to newer version of Illumina's TruSeq DNA Exome library prep kit - changed default col.names in readRegionsFromBedFile(); corresponding update of help page Version 1.23.1: - re-created genome data objects (old data objects had become incompatible with newer 'BSgenome' version) Version 1.23.0: - new branch for Bioconductor 3.13 devel Version 1.22.0: - release as part of Bioconductor 3.12 Version 1.21.0: - new branch for Bioconductor 3.12 devel Version 1.20.0: - release as part of Bioconductor 3.11 Version 1.19.1: - fix in nullModel() method to ensure compatibility with R 4.0 Version 1.19.0: - new branch for Bioconductor 3.11 devel Version 1.18.0: - release as part of Bioconductor 3.10 Version 1.17.3: - removed change history from package vignette for easier maintenance Version 1.17.2: - minor changes to DESCRIPTION file (system requirement GNU make) and src/Makevars Version 1.17.1: - changed summary() method for VariantAnnotation class in order to stay compatible with print() method in GenomicRanges package - corresponding minor adaptations in documentation and package vignette Version 1.17.0: - new branch for Bioconductor 3.10 devel Version 1.16.0: - release as part of Bioconductor 3.9 Version 1.15.1: - changed Rsamtools API to Rhtslib API Version 1.15.0: - new branch for Bioconductor 3.9 devel Version 1.14.0: - release as part of Bioconductor 3.8 Version 1.13.0: - new branch for Bioconductor 3.8 devel Version 1.12.0: - release as part of Bioconductor 3.7 Version 1.11.0: - new branch for Bioconductor 3.7 devel Version 1.10.0: - release as part of Bioconductor 3.6 Version 1.9.0: - new branch for Bioconductor 3.6 devel Version 1.8.0: - release as part of Bioconductor 3.5 Version 1.7.0: - new branch for Bioconductor 3.5 devel Version 1.6.0: - release as part of Bioconductor 3.4 Version 1.5.4: - fix in vignette code that became necessary because of a change in the hg38 transcript annotation Version 1.5.3: - readRegionsFromBedFile() now allows for including metadata columns - corresponding changes in documentation - fix of call to method rowRanges() into suggested package - fix of citation info file - fix of inst/NEWS Version 1.5.2: - version number bump for technical reasons related to Bioconductor build servers Version 1.5.1: - version number bump for technical reasons related to Bioconductor build servers Version 1.5.0: - new branch for Bioconductor 3.4 devel Version 1.4.0: - release as part of Bioconductor 3.3 Version 1.3.1: - added missing method readVariantInfo() for signature 'character', 'GRanges' - minor streamlining of source code of readGenotypeMatrix() - corrections of namespace imports Version 1.3.0: - new branch for Bioconductor 3.3 devel Version 1.2.0: - release as part of Bioconductor 3.2 Version 1.1.3: - further fix of weights() method for signature 'AssocTestResultRanges' Version 1.1.2: - fix of weights() method for signature 'AssocTestResultRanges' Version 1.1.1: - fix of filterResults() method for signature 'GRanges' Version 1.1.0: - new branch for Bioconductor 3.2 devel Version 1.0.0: - first official release as part of Bioconductor 3.1