Changes in version 1.1.8 (2024-10-11)                  

  - Added support for accessing and visualizing level-specific CNV
    frequency data.
  - Enabled calculation of level-specific CNV frequencies from segment
    data.

                 Changes in version 1.1.7 (2024-09-11)                  

  - Adapted to Progenetix API change: updated endpoint from
    "analyses/?output=cnvstats" to "services/cnvstats/".
  - The dataset parameter in pgxLoader is now used to select datasets
    directly from the Beacon response, rather than being used
    internally.
  - Modified pgxSegprocess to support usage with downloaded "pgxseg"
    files from Progenetix.

                 Changes in version 1.1.6 (2024-08-05)                  

  - Modified extract_general_results function to ensure it adapts
    correctly to arrays.
  - Moved callset and cnvstats data from the "g_variant" type to
    "cnv_fraction" to better align with data types.
  - Removed the pgxCount function and integrated its functionality into
    pgxLoader with the "sample_count" type, streamlining such query.

                 Changes in version 1.1.5 (2024-07-30)                  

  - Added config/datatable_mappings.yaml to define mapping rules between
    Beacon JSON responses and data tables.
  - Modified metadata access to retrieve data directly from the Beacon
    API instead of using the services/sampletable API.
  - Enabled querying of analyses information.
  - Updated the type parameter in pgxLoader to align more closely with
    Beacon v2 model entities: biosamples, individuals, analyses, and
    g_variants.
  - Added entry_point parameter to pgxLoader.
  - Removed filterLogic parameter from pgxLoader.
  - Optimized parallel query for variants.
  - Cleaned up code and vignettes.

                 Changes in version 1.1.3 (2024-06-14)                  

  - Add pgxMetaplot function to generate survival plots from metadata
  - Add num_cores parameter for parallel query of variants

                 Changes in version 1.1.2 (2024-05-03)                  

  - Add segtoFreq function to allow CNV frequency calculation from given
    segment data

                 Changes in version 0.99.7 (2023-10-20)                 

  - Add pgxFilter function to expose all available filters.

                 Changes in version 0.99.5 (2023-10-10)                 

  - Updated data structure for frequency data, transitioning from a
    simple list to Bioconductor containers.
  - Removed sections on survival analysis and frequency clustering
    analysis from the vignettes to align with the package's scope.

                 Changes in version 0.99.0 (2023-08-25)                 

  - Submitted to Bioconductor