Changes in version 1.4.0                        

  - gene_plot() defaults now to NULL in the intgroup parameter, which
    translates into using the first colData item

                        Changes in version 1.2.0                        

  - New functionality added for general scope tasks, such as feature
    annotation and summaries on the expression tables
  - The gene_plot() function now is (again) able to handle the
    specification of more than one grouping variable

                        Changes in version 1.0.0                        

  - mosdef is on Bioconductor!

                       Changes in version 0.99.4                        

  - Added persistent location to the script that generates the data
    objects

                       Changes in version 0.99.3                        

  - Working on the size and time constraints for the vignette/package to
    build and check on the BBS

                       Changes in version 0.99.2                        

  - Better specification of data objects format and location in the
    installed folder

                       Changes in version 0.99.1                        

  - This version contains the newly implemented changes as a response to
    the Bioconductor review. In brief, this includes:
    
      - renaming the functions (and parameters) to a more consistent
        style
      - reduction of the dependencies and runtime of checks/tests
      - more details on the exported data objects, and on the outputs
        (detailed in the vignette)
      - better structure for the vignette with cross-references among
        sections
      - modularization of some functions to avoid repetitive code
      - implementation of an API which is already framework-agnostic, to
        later accommodate e.g. edgeR/limma. Mainly, this implies the
        renaming of the dds to a more generic de_container, whereas the
        res_de parameter stays constant.
    
    For a full list of all changes implemented, please refer to the PR
    on the mosdef repository
    https://github.com/imbeimainz/mosdef/pull/11/

                       Changes in version 0.99.0                        

  - Ready for submission to Bioconductor!

                        Changes in version 0.4.0                        

  - Using longtests to reduce checking time, as per Bioc guidelines

                        Changes in version 0.3.0                        

  - Reordered the functions thematically into a better file naming
    structure
  - Renaming of functions to better mirror their aim - e.g. topGOtable()
    -> run_topGO(), while also homogenizing the case

                        Changes in version 0.2.0                        

  - Vignette contains worked out examples for the whole package
  - Added the de_table_painter() function

                        Changes in version 0.1.0                        

  - Changed the examples to macrophage, fixed minor bugs and added some
    parameters to the buttonifier function

                        Changes in version 0.0.2                        

  - Added new features (go_volcano, input_checks, de_volcano). Styled up
    the package and maybe more

                        Changes in version 0.0.1                        

  - Added the main functionality

                     Changes in version 0.0.0.9000                      

  - Added a NEWS.md file to track changes to the package.