Changes in version 2.0.1 - Dots plots are now explicitly sized with size_by=c("genesets", "significance", "none") Changes in version 2.0.0 - Version bump for bioconductor Changes in version 1.9.1 - msigdb_download() filters by distinct gene symbols within genesets (relevant to msigdb >=7.4.1) Changes in version 1.9.0 - Version bump for bioconductor Changes in version 1.7.2 - Add hyp_to_graph() - Add optional igraph export for hyp_hmap() - Switch hyp_hmap() node coloring codes from rgba to hex - Fix warning from deprecated guides() functionality Changes in version 1.7.1 - Add additional input checks for rgsets objects - Automatic removal of self loops from rgsets edges Changes in version 1.7.0 - Version bump for bioconductor Changes in version 1.5.3 - rctbl_build() now wraps hyp objects into unlabled multihyp objects - rctbl_build() nested tables shows the number of enriched genesets Changes in version 1.5.2 - Correct file extensions (.rmd/.html) from output of hyp_to_rmd() - Relative paths are now supported by hyp_to_rmd() Changes in version 1.5.1 - Fixed bug for wrong column names from enrichr_available() - Added the first shiny module for geneset selection Changes in version 1.5.0 - Version bump for bioconductor - Fixed hyp_dots(merge=TRUE) bug where some genesets were not showing - Added support for fetching non-human Enrichr libraries (e.g. Yeast, Fly, Worm, Fish) - Better reporting through rctbl_hyp() and rctbl_mhyp() Changes in version 1.4.0 - Version bump for bioconductor Changes in version 1.3.1 - Ability to clean genesets names - Multiple signatures can now be merged into a single plot with hyp_dots(merge=TRUE) - Set the hyp_dots() legend title to the significance measure used - Versioning information used in export functions now includes parameters passed to hypeR() Changes in version 1.3.0 - Version bump for bioconductor Changes in version 1.2.0 - Added the genesets object with versioning - Downloaded genesets are now wrapped into gsets or rgsets objects automatically - Added functionality to download genesets directly from enrichr - Simplified functionality to download genesets via msigdbr - Genesets versioning is included by default in exporting/reporting functions - Tables now include the size of signatures, genesets, and the background distribution - Converted lapply() functions to mapply() - Removed option to disable titles when multiple signatures are plotted - Removed option to show/return plots - Some variable names across functions were made shorter or more clear - Version bump for bioconductor Changes in version 1.1.10 - Changed default order of elements under each tab in hyp_to_rmd() function Changes in version 1.1.9 - Published in Bioinformatics - https://doi.org/10.1093/bioinformatics/btz700