Changes in version 1.28 - Update tests to latest testthat change. Changes in version 1.26 - Added support for plots of similarities with plot_data() and plot_similarity(). - Removed internal data accidentally exposed (It was only used for testing). - Fix problem with documenting the package via roxygen2. - Remove the \describe{} macro used in some pages. Changes in version 1.19.1 - Added alternative text to plots on vignettes. - Reactivated again the comparison with GOSemSim Changes in version 1.12 - Move to NEWS.md. - Corrected "value of length: 2 type: logical". - Avoid cropping the images. - Updated documentation. Changes in version 1.10.1 - Added a pkgdown website Changes in version 1.8.1 - Exported inverseList function - Improved spelling - Corrected a bug related to logical coercion of length greater than 1. Changes in version 1.6.1 - Corrected an empty condition in mclusterGeneSim - Corrected a logical check in mclusterSim - Improved coherence in the output between lists and GeneSetCollections - Added links between vignettes Changes in version 1.5.4 - Improved spelling - Reduced the complexity fo combineScoresPar and combineScores. - Improve efficiency of code in vignettes. - Change the news section - Adding a section about GeneOverlap package. - Changed the License Changes in version 1.3.3 - Add methods for GeneSetCollections Changes in version 1.1.12 - Improve speed on geneSim and clusterSim - Add a vignette describing more uses of BioCor - Adding more tests - Calculating similarities correctly when non-existent genes are provided. Changes in version 1.1.4 - Correct incorrect implementation of rcmax method Changes in version 1.1.3 - Improving reciprocal method - Increased testind of combineScores Changes in version 1.1.0 - Adding combineScoresPar for high number of comparisons - Improving the speed of mpathSim - Removing the dependency of graph Changes in version 0.99.33 - Add more test to increase coverage - Document better the BiocViews. Changes in version 0.99.32 - Accept named pathways in mpathSim - Accept named genes in mgeneSim - diceSim returns NA when not able to calculate similarities - Increase test coverage Changes in version 0.99.31 - Refer to weighted.mean in weighted help page - Change the default behaviour of mpathSim: now methods is NULL - Correct the misleading use of geneSetsCollection. - Add test for when large number of pathways are needed (pathSims_matrix) Changes in version 0.99.30 - Add reciprocal method to combineScores - Update documentation of combineScores Changes in version 0.99.29 - Update documentation of combineScores Changes in version 0.99.28 - Update documentation of combineScores Changes in version 0.99.27 - Correct a test for clusterSim Changes in version 0.99.26 - Update the required R version from 3.3 to 3.4's - Adding more tests to increase the coverage - Using mpathSim to calculate path similarities Changes in version 0.99.25 - Update Vignette to just output html Changes in version 0.99.24 - Submit the package to the Bioconductor project Changes in version 0.99.23 - Add the Bioconductor webhook