Changes in version 2.2.5                        

Minor Changes

  - Added sva batch correction method (for unknown variation correction)

                        Changes in version 2.2.4                        

Major Changes

  - Updated variation ratio analysis to be log transformed
  - Added umap exploratory option

                        Changes in version 2.2.3                        

Major Changes

  - Added limma as a batch correction
  - Added umap plot option
  - Added ellipses to pca plot

Minor Changes

  - Set p-val plot x scale to always be 0 to 1
  - Removed Intercept from p-val violin plots

                        Changes in version 2.2.2                        

Minor Changes

  - Updated SE object upload to allow assays of any name (no longer
    require one assay to be called "counts")

                        Changes in version 2.2.1                        

Minor Changes

  - Added pval information to the DESeq2 binomial evaluation

                        Changes in version 2.1.6                        

Bug Fixes

  - Corrected code for proper division of less than or 20+ samples

#Version 2.1.5

bug Fixes

  - Coerce variable of interest to a factor

                        Changes in version 2.1.4                        

Major Changes

  - Added negative binomial check for 20+ samples to DESeq2

                        Changes in version 2.1.3                        

Major Changes

  - Added negative binomial check for less than 20 samples to DESeq2

                        Changes in version 2.1.2                        

Major Changes

  - Added Variation Ratio Statistic to the explained variation tab

Minor Changes

  - Removed extra "Samples" column from example data
  - Uploaded bladder example data batch variable as a factor

                        Changes in version 2.1.1                        

Bug Fixes

  - Updated imports to include shinyjs
  - Updated imports to remove dendextend which is no longer utilized
  - Corrected typos in Intro vignette

                        Changes in version 2.0.0                        

Bug Fixes

  - Fixed various errors for the Bioconductor build

Major Changes

  - Created interactive Shiny interface
  - Allow user upload of data
  - Allow user download of Batch corrected and/or normalized data
  - Added Example Data Functionality

Minor Changes

  - Added a NEWS.md file to track changes to the package.

Changes made to dendrogram

  - Added dendrogram_color_palette.R for coloring dendrogram
  - Updated dendrogram.R allowing batch & category to plot together