goseq
This is the development version of goseq; for the stable release version, see goseq.
Gene Ontology analyser for RNA-seq and other length biased data
Bioconductor version: Development (3.20)
Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data
Author: Matthew Young
Maintainer: Matthew Young <my4 at sanger.ac.uk>, Nadia Davidson <nadia.davidson at mcri.edu.au>
Citation (from within R, enter
citation("goseq")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("goseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | GO, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription |
Version | 1.57.0 |
In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
License | LGPL (>= 2) |
Depends | R (>= 2.11.0), BiasedUrn, geneLenDataBase(>= 1.9.2) |
Imports | mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics |
System Requirements | |
URL |
See More
Suggests | edgeR, org.Hs.eg.db, rtracklayer |
Linking To | |
Enhances | |
Depends On Me | rgsepd |
Imports Me | ChAMP, Damsel, ideal, mosdef, SMITE |
Suggests Me | sparrow |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/goseq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/goseq |
Package Short Url | https://bioconductor.org/packages/goseq/ |
Package Downloads Report | Download Stats |