Paulson JN, Stine OC, Bravo HC, Pop M (2013). “Differential abundance analysis for microbial marker-gene surveys.” Nat Meth, advance online publication. doi:10.1038/nmeth.2658, http://www.nature.com/nmeth/journal/vaop/ncurrent/abs/nmeth.2658.html.

Paulson JN, Olson ND, Braccia DJ, Wagner J, Talukder H, Pop M, Bravo HC (2013). metagenomeSeq: Statistical analysis for sparse high-throughput sequncing.. Bioconductor package, http://www.cbcb.umd.edu/software/metagenomeSeq.

Paulson* JN, Talukder* H, Bravo HC (2017). “Longitudinal differential abundance analysis of marker-gene surveys using smoothing splines.” biorxiv. doi:10.1101/099457, https://www.biorxiv.org/content/10.1101/099457v1.