Zheng SC, Breeze CE, Beck S, Teschendorff AE (2018). “Identification of differentially methylated cell-types in Epigenome-Wide Association Studies.” Nature Methods, 15(12), 1059.
Zheng SC, Webster AP, Dong D, Feber A, Graham DG, Sullivan R, Jevons S, Lovat LB, Beck S, Widschwendter M, Teschendorff AE (2018). “A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix.” Epigenomics, 10(7).
Teschendorff AE, Breeze CE, Zheng SC, Beck S (2017). “A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.” BMC bioinformatics, 18(1), 105.
Luo Q, Dwaraka VB, Chen Q, Tong H, Zhu T, Seale K, Raffaele JM, Zheng SC, Mendez TL, Chen Y, Carreras N, Begum S, Mendez K, Voisin S, Eynon N, Lasky-Su JA, Smith R, Teschendorff AE (2023). “A meta-analysis of immune-cell fractions at high resolution reveals novel associations with common phenotypes and health outcomes.” Genome Medicine, 15(1), 59.
Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, Wiencke JK, Kelsey KT (2012). “DNA methylation arrays as surrogate measures of cell mixture distribution.” BMC bioinformatics, 13(1), 86.
Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, Hoang CD, Diehn M, Alizadeh AA (2015). “Robust enumeration of cell subsets from tissue expression profiles.” Nature Methods, 12(5), 453.
Teschendorff AE, Zheng SC (2017). “Cell-type deconvolution in epigenome-wide association studies: a review and recommendations.” Epigenomics, 9(5), 757.