derfinderData

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see derfinderData.

Processed BigWigs from BrainSpan for examples


Bioconductor version: 3.9

Processed 22 samples from BrainSpan keeping only the information for chromosome 21. Data is stored in the BigWig format and is used for examples in other packages.

Author: Leonardo Collado-Torres [aut, cre], Andrew Jaffe [aut], Jeffrey Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("derfinderData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderData")
Introduction to derfinderData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Homo_sapiens_Data, RNASeqData
Version 2.2.1
License Artistic-2.0
Depends R (>= 3.1.1)
Imports
System Requirements
URL https://github.com/leekgroup/derfinderData
Bug Reports https://github.com/leekgroup/derfinderData/issues
See More
Suggests sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6), knitrBootstrap (>= 0.9.0), RefManageR, rmarkdown (>= 0.3.3)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me derfinder, derfinderPlot
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package derfinderData_2.2.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/derfinderData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/derfinderData
Package Short Url https://bioconductor.org/packages/derfinderData/
Package Downloads Report Download Stats