MafDb.1Kgenomes.phase1.GRCh38

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MafDb.1Kgenomes.phase1.GRCh38.

Minor allele frequency data from 1000 Genomes Phase 1 for GRCh38


Bioconductor version: 3.9

Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version GRCh38.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("MafDb.1Kgenomes.phase1.GRCh38")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MafDb.1Kgenomes.phase1.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.7.0
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
System Requirements
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Suggests SNPlocs.Hsapiens.dbSNP149.GRCh38
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MafDb.1Kgenomes.phase1.GRCh38_3.7.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/MafDb.1Kgenomes.phase1.GRCh38/
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