Changes in version 1.15.6 - remove getChild, getChild.df, getParent, getParent.df, getSibling, getAncestor and getAncestor.df, instead use child, parent, sibling and ancestor methods implemented in tidytree and treeio (2019-01-30, Wed) - remove get.offspring.df and get.offspring.tip and instead use tidytree::offspring (2019-01-28, Mon) - facet_widths function to set relative widths of facet panels (2019-01-28, Mon) - the output is ggplotify::as.ggplot(grid_object), so it is not the original ggtree object. Changes in version 1.15.5 - bug fixed of theme_tree2 (2019-01-14, Mon) - https://github.com/GuangchuangYu/ggtree/issues/218 - mv rescale_tree to treeio (2019-01-11, Fri) Changes in version 1.15.4 - reimplement MRCA as a method inherited from tidytree (2019-01-10, Thu) - mv vignettes to treedata-book Changes in version 1.15.3 - move reroot method to treeio package and rename to root (2018-12-28, Fri) - bug fixed for setting branch.length="none" in unrooted layouts (2018-12-26, Wed) - bug introduced in https://github.com/GuangchuangYu/ggtree/pull/201 Changes in version 1.15.2 - compatible with tibble v=2.0.0 (2018-11-29, Thu) Changes in version 1.15.1 - now revts also reverse the branch column (2018-11-11, Sun) - https://groups.google.com/d/msgid/bioc-ggtree/50765a34-53e5-44d2-bb8f-6d20a11fa890%40googlegroups.com - better msg when taxa name not consistent in sequence and tree files with msaplot. (2018-11-07, Wed) - https://github.com/GuangchuangYu/ggtree/issues/172#issuecomment-436585370 Changes in version 1.14.0 - Bioconductor 3.8 release Changes in version 1.13.6 - set scale_y_continuous(expand = c(0, 0)) for gheatmap when colnames = FALSE (2018-10-17, Wed) - https://github.com/GuangchuangYu/ggtree/issues/204 - made data usable with treedata in 'equal_angle' and 'daylight' layouts (2018-10-11, Thu) - https://github.com/GuangchuangYu/ggtree/pull/201 Changes in version 1.13.5 - enable additional parameters passed to geom_rootedge (2018-09-13, Thu) - https://github.com/GuangchuangYu/ggtree/issues/195 - facet_labeller to label panels of facet_plot output (2018-09-10, Mon) - https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!msg/bioc-ggtree/nAl3bNswxQM/crBwKtS3BAAJ Changes in version 1.13.3 - update viewClade according to the change of ggplot2 (2018-08-07, Tue) - https://github.com/GuangchuangYu/ggtree/issues/188 Changes in version 1.13.2 - xmax_adjust in viewClade (2018-07-21, Sat) - https://github.com/GuangchuangYu/ggtree/issues/187 - update rd of facet_plot by adding description and example (2018-07-19, Thu) - order by y in facet_plot (2018-07-09, Mon) - extend parameter in geom_cladelabel and geom_strip supports specifying extension of both sides (2018-07-06, Fri) - geom_nodelab2 for circular layout (2018-07-03, Tue) - https://groups.google.com/d/msgid/bioc-ggtree/cbe5e1e3-99c4-481d-8523-d5b50cf0460b%40googlegroups.com - re-export ggplot2::fortify - https://groups.google.com/d/msgid/bioc-ggtree/bf7a9b3c-9a8f-4d8d-a782-1b467fba38bc%40googlegroups.com Changes in version 1.13.1 - geom_nodepoint & geom_tippoint now compatible with ggplot2 v 2.2.1 & 3.0.0 (2018-06-26, Tue) - geom_rootedge (2018-06-13, Wed) - https://github.com/GuangchuangYu/ggtree/issues/183 - clade_name parameter added in collapse (2018-05-28, Mon) - https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!msg/bioc-ggtree/0H1PCJPlI1Q/DeZf9EVhBQAJ - bug fixed of gheatmap for rowname subsetting is partial match in R (2018-05-23, Wed) - https://github.com/GuangchuangYu/ggtree/issues/182 - compatible with ggplot2 2.2.1.9000 for geom_text2(parse="emoji") - typo on vignettes (2018-05-08, Tue) - https://github.com/GuangchuangYu/ggtree/pull/178, thanks @abichat - compatible with ggplot2 2.2.1.9000 (2018-05-02, Wed) - incorporate newly introduce parameter linejoin and arrow.fill in geom_segment Changes in version 1.12.0 - Bioconductor 3.7 release (2018-05-01, Tue) Changes in version 1.11.6 - reexport treeio::read.iqtree & treeio::read.astral(2018-04-17, Tue) - now geom_treescale will plot the text that can always be separated from the bar (2018-03-07, Wed) - optimize daylight layout - https://github.com/GuangchuangYu/ggtree/pull/165 - https://github.com/GuangchuangYu/ggtree/pull/169 - geom_tiplab2 works with mapping = aes(subset) defined by users (2018-02-24, Sta) - https://groups.google.com/d/msgid/bioc-ggtree/72e18c5b-0ce5-4c25-80fa-3e2dabda8f72%40googlegroups.com - fixed overlapping branch after flip - https://github.com/GuangchuangYu/ggtree/issues/167 Changes in version 1.11.5 - support passing aes(subset) in geom_tippoint (2018-01-30, Tue) - support passing aes(subset) in geom_nodepoint (2018-01-26, Fri) - fine tune y position after flip; flip compatible with collapse - https://groups.google.com/d/msgid/bioc-ggtree/1d06342c-9645-4f71-9e66-7d7a7099bf0b%40googlegroups.com?utm_medium=email&utm_source=footer Changes in version 1.11.4 - re-implement collapse as collapse.ggtree method by importing dplyr::collapse generic to prevent function name collision (2018-01-03, Wed) - update treeVisualization vignette, with more layout examples added (2017-12-22, Fri) - update vignette (2017-12-21, Thu) - remove ggtreeUtilities.Rmd - merge treeAnnotation and advanceTreeAnnotation