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profileScoreDist

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see profileScoreDist.

Profile score distributions


Bioconductor version: 3.9

Regularization and score distributions for position count matrices.

Author: Paal O. Westermark

Maintainer: Paal O. Westermark <pal-olof.westermark at charite.de>

Citation (from within R, enter citation("profileScoreDist")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("profileScoreDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("profileScoreDist")
Using profileScoreDist PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneRegulation, Software, StatisticalMethod
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License MIT + file LICENSE
Depends R (>= 3.3)
Imports Rcpp, BiocGenerics, methods, graphics
System Requirements
URL
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Suggests BiocStyle, knitr, MotifDb
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package profileScoreDist_1.12.0.tar.gz
Windows Binary profileScoreDist_1.12.0.zip
Mac OS X 10.11 (El Capitan) profileScoreDist_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/profileScoreDist
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/profileScoreDist
Bioc Package Browser https://code.bioconductor.org/browse/profileScoreDist/
Package Short Url https://bioconductor.org/packages/profileScoreDist/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive