mpra
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see mpra.
Analyze massively parallel reporter assays
Bioconductor version: 3.9
Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
Author: Leslie Myint [cre, aut], Kasper D. Hansen [aut]
Maintainer: Leslie Myint <leslie.myint at gmail.com>
Citation (from within R, enter
citation("mpra")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mpra")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mpra")| mpra User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FunctionalGenomics, GeneRegulation, Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0), methods, BiocGenerics, SummarizedExperiment, limma |
| Imports | S4Vectors, scales, stats, graphics, statmod |
| System Requirements | |
| URL | https://github.com/hansenlab/mpra |
| Bug Reports | https://github.com/hansenlab/mpra/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mpra_1.6.0.tar.gz |
| Windows Binary | mpra_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | mpra_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mpra |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mpra |
| Bioc Package Browser | https://code.bioconductor.org/browse/mpra/ |
| Package Short Url | https://bioconductor.org/packages/mpra/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |