iteremoval
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see iteremoval.
Iteration removal method for feature selection
Bioconductor version: 3.9
The package provides a flexible algorithm to screen features of two distinct groups in consideration of overfitting and overall performance. It was originally tailored for methylation locus screening of NGS data, and it can also be used as a generic method for feature selection. Each step of the algorithm provides a default method for simple implemention, and the method can be replaced by a user defined function.
Author: Jiacheng Chuan [aut, cre]
Maintainer: Jiacheng Chuan <jiacheng_chuan at outlook.com>
citation("iteremoval")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iteremoval")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iteremoval")| An introduction to iteremoval | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, StatisticalMethod |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-2 |
| Depends | R (>= 3.5.0), ggplot2 (>= 2.2.1) |
| Imports | magrittr, graphics, utils, GenomicRanges, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/cihga39871/iteremoval |
| Bug Reports | https://github.com/cihga39871/iteremoval/issues |
See More
| Suggests | testthat, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iteremoval_1.4.0.tar.gz |
| Windows Binary | iteremoval_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | iteremoval_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iteremoval |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iteremoval |
| Bioc Package Browser | https://code.bioconductor.org/browse/iteremoval/ |
| Package Short Url | https://bioconductor.org/packages/iteremoval/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |